| Definition | Yersinia pseudotuberculosis IP 31758, complete genome. |
|---|---|
| Accession | NC_009708 |
| Length | 4,723,306 |
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The map label for this gene is yhcD [H]
Identifier: 153946995
GI number: 153946995
Start: 4265782
End: 4268160
Strand: Reverse
Name: yhcD [H]
Synonym: YpsIP31758_3782
Alternate gene names: 153946995
Gene position: 4268160-4265782 (Counterclockwise)
Preceding gene: 153946991
Following gene: 153947591
Centisome position: 90.36
GC content: 46.15
Gene sequence:
>2379_bases GTGGTCGCCCGTTGTATTAATATCCAGTGTATCGCATTCTTATTCTCTTTTTTTCCTACGCTGGCTTTCCCTGTCACAGA AGAGGGTGAGGTGGTTTTTGACATAGAAACGCTGGAGAGATTAGGTTATTCAGCTGAATTGGCAAAATTCTTCAGCGGTC AGGATAGATTTCTACCCGGCCAACATGATGTCACTATCATTATTAATGCCAGCAAGACCTACCGTATTGCAGCGACCTTC GATAGTGAAGGGAAACTGTGTATGGATAAAGCATTACTGATGGCCTTGAAATTACGAAATACAGAGAGTGACGGCAGTTG TGAGAATATGGAAGCCCGGTGGCCGGGTATGGTTGTTAAACTCTTTCCCGGCCAGTTCCGGGTGGAAATAACATTGCCGC AAGAGGCGTTTGATCCCGAAATGGAAGGAAGTGAGTATCAGCAAGGAGGGCATGCACTATTGCTTAATTACAATATCTTT GGCCAACGGGTCGAAAGTAACAATAGCCGCTTTAATCTTGTTCAGGGGCAATTTGAACCGGGGATTAATTTTAAAAATTG GGTACTGAGAAACCGAGGTTCCTACAGTTATAATCAAGGAGTGAGCCAATACTATAATCAGGAAACCTCTGCTTTACGCG CGGTTGAATCATTGAAATCCGTGGTTCAACTGGGTGAATTTGGTTTAGTGGGTAACACCTTTTCTGGTTTACCCGTAACC GGCATTCAGTTGTATTCCGATAACGCACAACGGGATGATACACAATTGATCGTACCCATCGAGGGGATTGCCAATACCAA TGCCACCATTGAAATCCGTCAGCGTGGGCGGGTTATTTATCGTACCATAGTGGCGCCAGGTCCTTTTTCGTTATCCAATA TCAGTAACTTCTCAAGTGGTGTTAACACCGATGTCAGTATTATCGAAGAGGATGGCACTCAACAGAATTTTACGGTGACG AGCGCCCTTGATATTAACGCTGAACAACAGGCATCCATCTACCAACTGGCCGTGGGCCGTTACCGGGACATGTTTACCGG TGAGGACAGGCCGTCACCGCTGCTGCTTTCCGGAGAAATGTCATTCAATCCGGCGGCTACCTTTTATATGACGTCGGCTG GGTTACTGTCCTCTGGCTATCAAAATATCCGTGTGCAAAATCTTTACAGTGGATGGGATCAGGCCTGGTTTTCAGCGGCA GCAAGTTATGCTAATACCAAAGACGCAGGACAGGGATACCAATTTAGCGTTCAGAATCAGATGACGATTAACGGTAATTT TGGTGTTTCATGGTCCTCGGTTTATGGCTCGGCCAATTACTGGTCACCGGATGATGCCCTAAGCAGTAGCAATAATCTGA ATGACCTGATGTTTGGAAAATTAAAAAATGCAACGTCGGTAGCCGTGAGCTGGGTGCACCCACGTTGGGGGGCATTCTCC TATGCTTTATCAAATAATATGTATTATCAAGCTTCTGGTCGTACTTACCATATTTTCTCAATTAGCGAACAATTTGGCCG GGCGACTACCATCTTGAGTTCTCAATTAAGTTCGCAAGGGCAAAATTCGCTCTATGTTGGTATCAATATGCCATTGGGTA ATGGGACGTTAAGTGGCCGGGTGCAACGTAACAATGGCAATGTGGCACTTGGTAGTACTTATCAAGGGCGATGGGGTGAC AACAAAGATTATTCGGTAGGGATCAGCGGTGACAATAGGCAACGGCGTATCAATGGTTCGATGAATATAAGGACGGCCTA TTCACAATTAACCGGTGGGGTTTCTCAAGCGACAAACAATAGCCGGTCTGCATATCTGTCATCGCGTGGTTCAGTGGCTT ACGTGAATAACACCTTTGCCACATCGTCGTCATCGGTTGGCGATACTTTTGCGGTGGTGAACATACCCAACCAACCCGGT TTGCGCGTTTCATCGCCGAGCAGCGGTATTGCGATTACGGATTATGCTGGGATAGCCTTGCTGCCATTAGTGAGGCCTTA CACCGCTTCGAAAGTACAAATAAGCACGCAAACATTGCCGCTGAATATTCGGCTTAATAACACCAGTGCCGATTTGCTGA TGACTCGAGGCTCGGTAGCAACTCATCATTTTGAGACAACAGAAACCCGCCAATTGCTGCTAACCATCCGTGGTAGTGAT GGTGAAATGCTGCCGATTGGTGCCAATGTATTGGATGAAAAAGGTAACTTTCTGGGGACGATTATCGGTGACGGAAACTT TATGCTGGAAAATAAGGCGATTGGCGTGACATTACGTGTTAAGGCAAATAACCGCGATGAATGTCGCGTTAACTACCGTG AACCTGAAAAATTTGACCCCGATGTATTGTATGAAGTTGCCGATGCGGTCTGTCAGTAA
Upstream 100 bases:
>100_bases ATATACCATTGTTTTATTTAACTCTGGGGTGATATTCGATTTTTCAATAATCAATTCACCTATTAGTTTTTATTAATAAT TAATTTTTCAGGGAATTTTC
Downstream 100 bases:
>100_bases GTTTTACATTATAAAAGCAGCAATGACAAAAACAGACCAAATGTGAAGACTTTTTGAATATAGGATCTCTTATGCAAAAT TTCCCCACTCACCATCGTGA
Product: fimbrial usher protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 792; Mature: 792
Protein sequence:
>792_residues MVARCINIQCIAFLFSFFPTLAFPVTEEGEVVFDIETLERLGYSAELAKFFSGQDRFLPGQHDVTIIINASKTYRIAATF DSEGKLCMDKALLMALKLRNTESDGSCENMEARWPGMVVKLFPGQFRVEITLPQEAFDPEMEGSEYQQGGHALLLNYNIF GQRVESNNSRFNLVQGQFEPGINFKNWVLRNRGSYSYNQGVSQYYNQETSALRAVESLKSVVQLGEFGLVGNTFSGLPVT GIQLYSDNAQRDDTQLIVPIEGIANTNATIEIRQRGRVIYRTIVAPGPFSLSNISNFSSGVNTDVSIIEEDGTQQNFTVT SALDINAEQQASIYQLAVGRYRDMFTGEDRPSPLLLSGEMSFNPAATFYMTSAGLLSSGYQNIRVQNLYSGWDQAWFSAA ASYANTKDAGQGYQFSVQNQMTINGNFGVSWSSVYGSANYWSPDDALSSSNNLNDLMFGKLKNATSVAVSWVHPRWGAFS YALSNNMYYQASGRTYHIFSISEQFGRATTILSSQLSSQGQNSLYVGINMPLGNGTLSGRVQRNNGNVALGSTYQGRWGD NKDYSVGISGDNRQRRINGSMNIRTAYSQLTGGVSQATNNSRSAYLSSRGSVAYVNNTFATSSSSVGDTFAVVNIPNQPG LRVSSPSSGIAITDYAGIALLPLVRPYTASKVQISTQTLPLNIRLNNTSADLLMTRGSVATHHFETTETRQLLLTIRGSD GEMLPIGANVLDEKGNFLGTIIGDGNFMLENKAIGVTLRVKANNRDECRVNYREPEKFDPDVLYEVADAVCQ
Sequences:
>Translated_792_residues MVARCINIQCIAFLFSFFPTLAFPVTEEGEVVFDIETLERLGYSAELAKFFSGQDRFLPGQHDVTIIINASKTYRIAATF DSEGKLCMDKALLMALKLRNTESDGSCENMEARWPGMVVKLFPGQFRVEITLPQEAFDPEMEGSEYQQGGHALLLNYNIF GQRVESNNSRFNLVQGQFEPGINFKNWVLRNRGSYSYNQGVSQYYNQETSALRAVESLKSVVQLGEFGLVGNTFSGLPVT GIQLYSDNAQRDDTQLIVPIEGIANTNATIEIRQRGRVIYRTIVAPGPFSLSNISNFSSGVNTDVSIIEEDGTQQNFTVT SALDINAEQQASIYQLAVGRYRDMFTGEDRPSPLLLSGEMSFNPAATFYMTSAGLLSSGYQNIRVQNLYSGWDQAWFSAA ASYANTKDAGQGYQFSVQNQMTINGNFGVSWSSVYGSANYWSPDDALSSSNNLNDLMFGKLKNATSVAVSWVHPRWGAFS YALSNNMYYQASGRTYHIFSISEQFGRATTILSSQLSSQGQNSLYVGINMPLGNGTLSGRVQRNNGNVALGSTYQGRWGD NKDYSVGISGDNRQRRINGSMNIRTAYSQLTGGVSQATNNSRSAYLSSRGSVAYVNNTFATSSSSVGDTFAVVNIPNQPG LRVSSPSSGIAITDYAGIALLPLVRPYTASKVQISTQTLPLNIRLNNTSADLLMTRGSVATHHFETTETRQLLLTIRGSD GEMLPIGANVLDEKGNFLGTIIGDGNFMLENKAIGVTLRVKANNRDECRVNYREPEKFDPDVLYEVADAVCQ >Mature_792_residues MVARCINIQCIAFLFSFFPTLAFPVTEEGEVVFDIETLERLGYSAELAKFFSGQDRFLPGQHDVTIIINASKTYRIAATF DSEGKLCMDKALLMALKLRNTESDGSCENMEARWPGMVVKLFPGQFRVEITLPQEAFDPEMEGSEYQQGGHALLLNYNIF GQRVESNNSRFNLVQGQFEPGINFKNWVLRNRGSYSYNQGVSQYYNQETSALRAVESLKSVVQLGEFGLVGNTFSGLPVT GIQLYSDNAQRDDTQLIVPIEGIANTNATIEIRQRGRVIYRTIVAPGPFSLSNISNFSSGVNTDVSIIEEDGTQQNFTVT SALDINAEQQASIYQLAVGRYRDMFTGEDRPSPLLLSGEMSFNPAATFYMTSAGLLSSGYQNIRVQNLYSGWDQAWFSAA ASYANTKDAGQGYQFSVQNQMTINGNFGVSWSSVYGSANYWSPDDALSSSNNLNDLMFGKLKNATSVAVSWVHPRWGAFS YALSNNMYYQASGRTYHIFSISEQFGRATTILSSQLSSQGQNSLYVGINMPLGNGTLSGRVQRNNGNVALGSTYQGRWGD NKDYSVGISGDNRQRRINGSMNIRTAYSQLTGGVSQATNNSRSAYLSSRGSVAYVNNTFATSSSSVGDTFAVVNIPNQPG LRVSSPSSGIAITDYAGIALLPLVRPYTASKVQISTQTLPLNIRLNNTSADLLMTRGSVATHHFETTETRQLLLTIRGSD GEMLPIGANVLDEKGNFLGTIIGDGNFMLENKAIGVTLRVKANNRDECRVNYREPEKFDPDVLYEVADAVCQ
Specific function: Involved in the export and assembly of a fimbrial subunit across the outer membrane [H]
COG id: COG3188
COG function: function code NU; P pilus assembly protein, porin PapC
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1789610, Length=809, Percent_Identity=27.3176761433869, Blast_Score=287, Evalue=2e-78, Organism=Escherichia coli, GI1786332, Length=798, Percent_Identity=25.5639097744361, Blast_Score=167, Evalue=2e-42, Organism=Escherichia coli, GI1786744, Length=302, Percent_Identity=32.7814569536424, Blast_Score=125, Evalue=9e-30, Organism=Escherichia coli, GI87081778, Length=800, Percent_Identity=23.5, Blast_Score=124, Evalue=2e-29, Organism=Escherichia coli, GI1788427, Length=754, Percent_Identity=23.6074270557029, Blast_Score=111, Evalue=2e-25, Organism=Escherichia coli, GI1790772, Length=326, Percent_Identity=29.4478527607362, Blast_Score=108, Evalue=2e-24, Organism=Escherichia coli, GI1789533, Length=359, Percent_Identity=26.7409470752089, Blast_Score=104, Evalue=2e-23, Organism=Escherichia coli, GI1787172, Length=322, Percent_Identity=27.9503105590062, Blast_Score=98, Evalue=2e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 86947; Mature: 86947
Theoretical pI: Translated: 5.20; Mature: 5.20
Prosite motif: PS00061 ADH_SHORT ; PS01151 FIMBRIAL_USHER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVARCINIQCIAFLFSFFPTLAFPVTEEGEVVFDIETLERLGYSAELAKFFSGQDRFLPG CCEEEECHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHCCCHHHHHHHHCCCCCCCCC QHDVTIIINASKTYRIAATFDSEGKLCMDKALLMALKLRNTESDGSCENMEARWPGMVVK CCCEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEE LFPGQFRVEITLPQEAFDPEMEGSEYQQGGHALLLNYNIFGQRVESNNSRFNLVQGQFEP ECCCEEEEEEECCHHHCCCCCCCCHHCCCCCEEEEEEEEEEEEECCCCCEEEEEECCCCC GINFKNWVLRNRGSYSYNQGVSQYYNQETSALRAVESLKSVVQLGEFGLVGNTFSGLPVT CCCHHHEEEECCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCEE GIQLYSDNAQRDDTQLIVPIEGIANTNATIEIRQRGRVIYRTIVAPGPFSLSNISNFSSG EEEEECCCCCCCCCEEEEEECCCCCCCCEEEEECCCCEEEEEEECCCCCCHHCCCCCCCC VNTDVSIIEEDGTQQNFTVTSALDINAEQQASIYQLAVGRYRDMFTGEDRPSPLLLSGEM CCCCEEEEECCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCC SFNPAATFYMTSAGLLSSGYQNIRVQNLYSGWDQAWFSAAASYANTKDAGQGYQFSVQNQ CCCCCEEEEEECCHHHHCCCCCEEEEEHHCCHHHHHHHHHHHCCCCCCCCCCEEEEECCE MTINGNFGVSWSSVYGSANYWSPDDALSSSNNLNDLMFGKLKNATSVAVSWVHPRWGAFS EEECCCCCEEEHHHCCCCCCCCCHHHCCCCCCCCHHHHHCCCCCCEEEEEEECCCCCEEE YALSNNMYYQASGRTYHIFSISEQFGRATTILSSQLSSQGQNSLYVGINMPLGNGTLSGR EEECCCEEEEECCCEEEEEEECHHHCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEE VQRNNGNVALGSTYQGRWGDNKDYSVGISGDNRQRRINGSMNIRTAYSQLTGGVSQATNN EEECCCCEEECCCCCCCCCCCCCEEEEECCCCCEEEECCCEEEEEHHHHHCCCHHHCCCC SRSAYLSSRGSVAYVNNTFATSSSSVGDTFAVVNIPNQPGLRVSSPSSGIAITDYAGIAL CCEEEEECCCCEEEEECEECCCCCCCCCEEEEEECCCCCCCEEECCCCCEEEEECCCEEE LPLVRPYTASKVQISTQTLPLNIRLNNTSADLLMTRGSVATHHFETTETRQLLLTIRGSD EHHCCCCCCCEEEEEEEEEEEEEEECCCCCEEEEECCCCEEEEECCCCCEEEEEEEECCC GEMLPIGANVLDEKGNFLGTIIGDGNFMLENKAIGVTLRVKANNRDECRVNYREPEKFDP CCEEEECCHHCCCCCCEEEEEEECCCEEEECCEEEEEEEEECCCCCCEEEECCCCCCCCH DVLYEVADAVCQ HHHHHHHHHHCC >Mature Secondary Structure MVARCINIQCIAFLFSFFPTLAFPVTEEGEVVFDIETLERLGYSAELAKFFSGQDRFLPG CCEEEECHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHCCCHHHHHHHHCCCCCCCCC QHDVTIIINASKTYRIAATFDSEGKLCMDKALLMALKLRNTESDGSCENMEARWPGMVVK CCCEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEE LFPGQFRVEITLPQEAFDPEMEGSEYQQGGHALLLNYNIFGQRVESNNSRFNLVQGQFEP ECCCEEEEEEECCHHHCCCCCCCCHHCCCCCEEEEEEEEEEEEECCCCCEEEEEECCCCC GINFKNWVLRNRGSYSYNQGVSQYYNQETSALRAVESLKSVVQLGEFGLVGNTFSGLPVT CCCHHHEEEECCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCEE GIQLYSDNAQRDDTQLIVPIEGIANTNATIEIRQRGRVIYRTIVAPGPFSLSNISNFSSG EEEEECCCCCCCCCEEEEEECCCCCCCCEEEEECCCCEEEEEEECCCCCCHHCCCCCCCC VNTDVSIIEEDGTQQNFTVTSALDINAEQQASIYQLAVGRYRDMFTGEDRPSPLLLSGEM CCCCEEEEECCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCC SFNPAATFYMTSAGLLSSGYQNIRVQNLYSGWDQAWFSAAASYANTKDAGQGYQFSVQNQ CCCCCEEEEEECCHHHHCCCCCEEEEEHHCCHHHHHHHHHHHCCCCCCCCCCEEEEECCE MTINGNFGVSWSSVYGSANYWSPDDALSSSNNLNDLMFGKLKNATSVAVSWVHPRWGAFS EEECCCCCEEEHHHCCCCCCCCCHHHCCCCCCCCHHHHHCCCCCCEEEEEEECCCCCEEE YALSNNMYYQASGRTYHIFSISEQFGRATTILSSQLSSQGQNSLYVGINMPLGNGTLSGR EEECCCEEEEECCCEEEEEEECHHHCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEE VQRNNGNVALGSTYQGRWGDNKDYSVGISGDNRQRRINGSMNIRTAYSQLTGGVSQATNN EEECCCCEEECCCCCCCCCCCCCEEEEECCCCCEEEECCCEEEEEHHHHHCCCHHHCCCC SRSAYLSSRGSVAYVNNTFATSSSSVGDTFAVVNIPNQPGLRVSSPSSGIAITDYAGIAL CCEEEEECCCCEEEEECEECCCCCCCCCEEEEEECCCCCCCEEECCCCCEEEEECCCEEE LPLVRPYTASKVQISTQTLPLNIRLNNTSADLLMTRGSVATHHFETTETRQLLLTIRGSD EHHCCCCCCCEEEEEEEEEEEEEEECCCCCEEEEECCCCEEEEECCCCCEEEEEEEECCC GEMLPIGANVLDEKGNFLGTIIGDGNFMLENKAIGVTLRVKANNRDECRVNYREPEKFDP CCEEEECCHHCCCCCCEEEEEEECCCEEEECCEEEEEEEEECCCCCCEEEECCCCCCCCH DVLYEVADAVCQ HHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]