Click here to switch to the map view.

The map label for this gene is yhcA [H]

Identifier: 153947591

GI number: 153947591

Start: 4264967

End: 4265659

Strand: Reverse

Name: yhcA [H]

Synonym: YpsIP31758_3781

Alternate gene names: 153947591

Gene position: 4265659-4264967 (Counterclockwise)

Preceding gene: 153946995

Following gene: 153950194

Centisome position: 90.31

GC content: 43.87

Gene sequence:

>693_bases
GTGAATAGCGTCAATCGTTTTAACATCTTCTTTGTATTTACGTTGTTGATTTTATTGAGTAGTTGGAGCGCAGTATCTTA
CGCGTCGTTTAAATTAGAAAGCACGACGGTAATCTTGCAAGAAAGTGAGGCTCGAACCAGTTTTACTATCGATAATATCT
CTAGCAATCCAATACTGCTGGTGACTAAATTAACGGATTTGGACGGCAAAAGTTTCAGTAAGCAGATTTTGATTTCCCCC
CCGGTGACCCGTATTAATGCAGGGCAAAGCCAGCAAGTGAATTTTGTCTTGAAGAAGGGGAGCGTCTTGAACAATGAAGT
GTTGTTAAAAGCCTCTTTTGAAGGGGTTGAACAGGTCCCCGGTAATGCGGCGGTTATGCCAATTCGTCAGGAGATCGGCT
TTCTGATCCAGCCGAGTGCTGTGCCACAAATTAGAATGCCGTGGCAAACGTTAGTTTTCTCCATATCGGGCAATAATTTG
GTTATTAAGAATCCTGGTAAACATGTGGTCCGCTTAGGGCCTCAGATTATTTTAGTCCCAAGTAATGAGGTGGTTGCACT
GGGTAATCCTTATATTATGCCGGAGACTTCCAAACTGTTTCCGATAACGTCATCACCCACTGCCGTTAAAGTCACCCCGC
TAAGCCGTTATGGTTTTGTCCAGACTGAAGTCACATTGCCGGTAACGCGTTAA

Upstream 100 bases:

>100_bases
ATGACAAAAACAGACCAAATGTGAAGACTTTTTGAATATAGGATCTCTTATGCAAAATTTCCCCACTCACCATCGTGATA
TTGGTGCGACAATCATATAC

Downstream 100 bases:

>100_bases
GGTTATTTTGATGTGGGGCGATCATCTTTATACAGAGGGCGGTATTTTTTTCCCAGTAGTAGAAATTGATATGCCGCAAG
AGTTTGCCGGTTCTGCAAGA

Product: periplasmic chaperone protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MNSVNRFNIFFVFTLLILLSSWSAVSYASFKLESTTVILQESEARTSFTIDNISSNPILLVTKLTDLDGKSFSKQILISP
PVTRINAGQSQQVNFVLKKGSVLNNEVLLKASFEGVEQVPGNAAVMPIRQEIGFLIQPSAVPQIRMPWQTLVFSISGNNL
VIKNPGKHVVRLGPQIILVPSNEVVALGNPYIMPETSKLFPITSSPTAVKVTPLSRYGFVQTEVTLPVTR

Sequences:

>Translated_230_residues
MNSVNRFNIFFVFTLLILLSSWSAVSYASFKLESTTVILQESEARTSFTIDNISSNPILLVTKLTDLDGKSFSKQILISP
PVTRINAGQSQQVNFVLKKGSVLNNEVLLKASFEGVEQVPGNAAVMPIRQEIGFLIQPSAVPQIRMPWQTLVFSISGNNL
VIKNPGKHVVRLGPQIILVPSNEVVALGNPYIMPETSKLFPITSSPTAVKVTPLSRYGFVQTEVTLPVTR
>Mature_230_residues
MNSVNRFNIFFVFTLLILLSSWSAVSYASFKLESTTVILQESEARTSFTIDNISSNPILLVTKLTDLDGKSFSKQILISP
PVTRINAGQSQQVNFVLKKGSVLNNEVLLKASFEGVEQVPGNAAVMPIRQEIGFLIQPSAVPQIRMPWQTLVFSISGNNL
VIKNPGKHVVRLGPQIILVPSNEVVALGNPYIMPETSKLFPITSSPTAVKVTPLSRYGFVQTEVTLPVTR

Specific function: Could be required for the biogenesis of a putative fimbria [H]

COG id: COG3121

COG function: function code NU; P pilus assembly protein, chaperone PapD

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1789609, Length=190, Percent_Identity=32.6315789473684, Blast_Score=110, Evalue=6e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR016148
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 25228; Mature: 25228

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSVNRFNIFFVFTLLILLSSWSAVSYASFKLESTTVILQESEARTSFTIDNISSNPILL
CCCCCEEHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEEECCCCEEEEEECCCCCCEEE
VTKLTDLDGKSFSKQILISPPVTRINAGQSQQVNFVLKKGSVLNNEVLLKASFEGVEQVP
EEEEECCCCCCCCCEEEECCCCEEECCCCCCEEEEEEECCCCCCCEEEEEEECCCHHHCC
GNAAVMPIRQEIGFLIQPSAVPQIRMPWQTLVFSISGNNLVIKNPGKHVVRLGPQIILVP
CCEEEEEEHHHCCEEECCCCCCEEECCHHHEEEEECCCEEEEECCCCEEEEECCEEEEEC
SNEVVALGNPYIMPETSKLFPITSSPTAVKVTPLSRYGFVQTEVTLPVTR
CCCEEECCCCEECCCCCEEEEECCCCCEEEEEECHHCCEEEEEEEEEECC
>Mature Secondary Structure
MNSVNRFNIFFVFTLLILLSSWSAVSYASFKLESTTVILQESEARTSFTIDNISSNPILL
CCCCCEEHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEEECCCCEEEEEECCCCCCEEE
VTKLTDLDGKSFSKQILISPPVTRINAGQSQQVNFVLKKGSVLNNEVLLKASFEGVEQVP
EEEEECCCCCCCCCEEEECCCCEEECCCCCCEEEEEEECCCCCCCEEEEEEECCCHHHCC
GNAAVMPIRQEIGFLIQPSAVPQIRMPWQTLVFSISGNNLVIKNPGKHVVRLGPQIILVP
CCEEEEEEHHHCCEEECCCCCCEEECCHHHEEEEECCCEEEEECCCCEEEEECCEEEEEC
SNEVVALGNPYIMPETSKLFPITSSPTAVKVTPLSRYGFVQTEVTLPVTR
CCCEEECCCCEECCCCCEEEEECCCCCEEEEEECHHCCEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1447980; 9278503 [H]