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The map label for this gene is dppB [H]

Identifier: 153946908

GI number: 153946908

Start: 4590464

End: 4591483

Strand: Reverse

Name: dppB [H]

Synonym: YpsIP31758_4074

Alternate gene names: 153946908

Gene position: 4591483-4590464 (Counterclockwise)

Preceding gene: 153950511

Following gene: 153948735

Centisome position: 97.21

GC content: 52.55

Gene sequence:

>1020_bases
ATGTTGCAGTTCATACTCCGACGTTTGGGGTTAGTTATCCCAACGTTTATCGGCATTACTTTGCTGACCTTTGCTTTTGT
CCATATGATCCCCGGTGACCCGGTGACCATCATGGCGGGGGAACGCGGTATCTCTGCCGAGCGTCATGCTCAAGTCATGG
CGGAAATGGGGCTGGACAAGCCTCTCTATCAACAATATTTCCGCTATGTAAATGGCGTTTTACATGGTGACCTTGGCATT
TCGCTGAAAAGCCGTATTGCGGTATGGGATGAGTTTGTCCCGCGCTTTAAAGCAACACTGGAACTGGGGATCTGCGCGAT
GCTGTTTGCTATCGCAGTCGGCATTCCGGTTGGTGTGCTGGCAGCAGTGAAACGCGGTTCAATATTTGATCACACCGCCG
TGGGGATCTCCCTTACCGGCTATTCGATGCCTATCTTCTGGTGGGGCATCATGCTGATCATGCTGGTCTCGGTGCAATGG
GACCTGACCCCGGTTTCCGGGCGTGTCAGCGATACCGTGTTCCTCGATGACAGCCTGCCTCTGACGGGGTTTATGTTGAT
TGATACCCTCATCTGGGGGGAACCTGACGATTTTAAAGATGCGGTAATGCATATGATTTTACCGGCAATCGTCTTGGGGA
CTATTCCCTTGGCGGTGATCGTGCGTATGACTCGTTCCTCCATGTTGGAAGTGTTGGGGGAGGATTATATCCGTACTGCG
CGGGCCAAAGGGCTGAGCCGCATGCGGGTGATTGTGGTCCATGCGTTACGCAATGCCTTGCTGCCTGTCATCACGGTGAT
TGGTTTGCAGGTTGGTACCATGCTGGCTGGGGCTATCTTGACGGAAACCATCTTCTCGTGGCCGGGTCTGGGTCGTTGGC
TGATGGATGCATTGCAACGCCGTGATTACCCTGTGGTACAGGGGGGGGTGTTGCTGGTCGCGATCATGATTATTTTAGTT
AACTTGCTGGTAGATGTGCTCTATGGCGTAGTTAACCCGCGTATTCGTCACAAGAAATAA

Upstream 100 bases:

>100_bases
CTGTCGCTCAACATCGACGAATAAAATCGCTTATTTGGAGAGGTTTAATAAGCCAGGTTGCCTATGAGCAGCCCGGCATT
CTACACAGAGAGTTCGGGAT

Downstream 100 bases:

>100_bases
GGGGCGCAGAATGTCTCAACTTATTGAGTCAGCAGTAAAAAGTGCGCCGAAGCCAATGACGCCATTGCAGGAATTTTGGC
ACTATTTCAAGCGCAATAAA

Product: dipeptide ABC transporter permease

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVTIMAGERGISAERHAQVMAEMGLDKPLYQQYFRYVNGVLHGDLGI
SLKSRIAVWDEFVPRFKATLELGICAMLFAIAVGIPVGVLAAVKRGSIFDHTAVGISLTGYSMPIFWWGIMLIMLVSVQW
DLTPVSGRVSDTVFLDDSLPLTGFMLIDTLIWGEPDDFKDAVMHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTA
RAKGLSRMRVIVVHALRNALLPVITVIGLQVGTMLAGAILTETIFSWPGLGRWLMDALQRRDYPVVQGGVLLVAIMIILV
NLLVDVLYGVVNPRIRHKK

Sequences:

>Translated_339_residues
MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVTIMAGERGISAERHAQVMAEMGLDKPLYQQYFRYVNGVLHGDLGI
SLKSRIAVWDEFVPRFKATLELGICAMLFAIAVGIPVGVLAAVKRGSIFDHTAVGISLTGYSMPIFWWGIMLIMLVSVQW
DLTPVSGRVSDTVFLDDSLPLTGFMLIDTLIWGEPDDFKDAVMHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTA
RAKGLSRMRVIVVHALRNALLPVITVIGLQVGTMLAGAILTETIFSWPGLGRWLMDALQRRDYPVVQGGVLLVAIMIILV
NLLVDVLYGVVNPRIRHKK
>Mature_339_residues
MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVTIMAGERGISAERHAQVMAEMGLDKPLYQQYFRYVNGVLHGDLGI
SLKSRIAVWDEFVPRFKATLELGICAMLFAIAVGIPVGVLAAVKRGSIFDHTAVGISLTGYSMPIFWWGIMLIMLVSVQW
DLTPVSGRVSDTVFLDDSLPLTGFMLIDTLIWGEPDDFKDAVMHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTA
RAKGLSRMRVIVVHALRNALLPVITVIGLQVGTMLAGAILTETIFSWPGLGRWLMDALQRRDYPVVQGGVLLVAIMIILV
NLLVDVLYGVVNPRIRHKK

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=339, Percent_Identity=88.2005899705015, Blast_Score=604, Evalue=1e-174,
Organism=Escherichia coli, GI1787053, Length=338, Percent_Identity=41.1242603550296, Blast_Score=263, Evalue=2e-71,
Organism=Escherichia coli, GI1787761, Length=329, Percent_Identity=44.0729483282675, Blast_Score=238, Evalue=3e-64,
Organism=Escherichia coli, GI1787550, Length=283, Percent_Identity=38.86925795053, Blast_Score=207, Evalue=1e-54,
Organism=Escherichia coli, GI1787497, Length=338, Percent_Identity=35.207100591716, Blast_Score=197, Evalue=9e-52,
Organism=Escherichia coli, GI1789888, Length=343, Percent_Identity=33.2361516034985, Blast_Score=189, Evalue=1e-49,
Organism=Escherichia coli, GI1788504, Length=378, Percent_Identity=28.8359788359788, Blast_Score=143, Evalue=2e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 37459; Mature: 37459

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVTIMAGERGISAERHAQVMAEMGLDK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
PLYQQYFRYVNGVLHGDLGISLKSRIAVWDEFVPRFKATLELGICAMLFAIAVGIPVGVL
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVKRGSIFDHTAVGISLTGYSMPIFWWGIMLIMLVSVQWDLTPVSGRVSDTVFLDDSLP
HHHHCCCCCCCHHCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCC
LTGFMLIDTLIWGEPDDFKDAVMHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTA
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAKGLSRMRVIVVHALRNALLPVITVIGLQVGTMLAGAILTETIFSWPGLGRWLMDALQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
RDYPVVQGGVLLVAIMIILVNLLVDVLYGVVNPRIRHKK
CCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVTIMAGERGISAERHAQVMAEMGLDK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
PLYQQYFRYVNGVLHGDLGISLKSRIAVWDEFVPRFKATLELGICAMLFAIAVGIPVGVL
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVKRGSIFDHTAVGISLTGYSMPIFWWGIMLIMLVSVQWDLTPVSGRVSDTVFLDDSLP
HHHHCCCCCCCHHCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCC
LTGFMLIDTLIWGEPDDFKDAVMHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTA
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAKGLSRMRVIVVHALRNALLPVITVIGLQVGTMLAGAILTETIFSWPGLGRWLMDALQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
RDYPVVQGGVLLVAIMIILVNLLVDVLYGVVNPRIRHKK
CCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]