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The map label for this gene is hycF [C]

Identifier: 153952390

GI number: 153952390

Start: 249058

End: 250731

Strand: Direct

Name: hycF [C]

Synonym: JJD26997_0275

Alternate gene names: 153952390

Gene position: 249058-250731 (Clockwise)

Preceding gene: 153951677

Following gene: 153951403

Centisome position: 13.5

GC content: 31.36

Gene sequence:

>1674_bases
ATGCAAGATTTTATTTATATAAAAAATGATGTTTTGATCCCTTTGCCTGATGCTATTGAAATTTTAGATCAGGCAAATGA
TAAAGAAGCATTAATTTGCAATGATAAAAATCAAAAAGCACAAATTTATGCCCCTGAGATTAATTTTTATCTTAAAAATT
CTCAAGATGAAATTTTAGAGCAAAGTAAAAATGTTTTAACGCTTTATGAAGCAAGGGCTAGCGTTTATGATTTAGGGCTT
GATTTAGAACAAAGCAAAGAAGTACAAAATCGTTTGATTTTGGTAGATAGTGATACTCAAACTGTAGAGTTTTTAAAAGA
ACATGGATTTAAGGTTATTGCTTTAAGTAGTGCAGAAATTTTAGCTGTTTTTGGAAGTGTGGGGGAGCTTTGTGCTGTGG
TTAAAAATCAAGGCGAAGAAGTGGAAATAGATTTTGATTTTTTACTTTTTAAAGCTGAAGATTTAAGCGTTGTGCGTAAA
GATTTTACAAGACAAAGTGGATGTTATAATCTTTTAAATTTTGAAAATCTTGAAGCATTGTTAGAGTTTTTGCAAAGCAA
AAGTCCAAAATATCCTTATAAAACCTATATTAGCTATAATGCTAGCGTGTGTCAATACCACGAAAGACGCAGTGAGCATT
GTGCAAAATGTGCTGAAATTTGTCCTACTGTGGCGATTTTAAAAGATGATGAAAACAAACATTTGGAATTTTCTCAAGTG
GATTGTTTGGGTTGTGGAGGATGTATTAGTGTGTGTCCTAGCGGATCGCTTGATTATGCTCCTATGCCAAGAGAAAGTTT
TTTTACGCTTTGCGAGTTTTATAAAGATAAAAAAATTTTAATTATTCCTAAAAAAATGTCTTTAGAAAATTTAAACCTTG
CTTTACCAAAAGATGTTTTACCCTTTATGATAGAGGGTGAAAAATGGCTTTCTTCTATGCATTTTTTAACGCTTTTGCAA
AATAGTGGAGCAAATTTGGTTTTTTATACGGATTTTGTATCTCGTGGTAGCAATGAAGCTATTGTACTTTTAAATACTTT
TTTTGAGAGAAAATTTCAAAAAAAAGCTATTTTTGTTGCTAAAGATGAAAAAGAATTGCAAAATGTTTTAAAAGAGCAAG
AATTCATACAAGATTTAAAATATGATTTTCATAACAACATCTTAACTACAAGAGAAAATTTTGCCAAAAGAATGCAAGAA
ATGATAAAAAATGAAGATTTTGGCAGTATAGAAAGTGGCGAATGGTTGCGTTATGGTAAGGTAGAAATCAATCCTAACAC
CTGTACGCTTTGTCTTTCTTGTGTGGGTGCTTGTAATGTAGGAGCTTTAATCGCTGATACTAAAGAAAATGCTTTGAAAT
TCAATGCTTCTCTTTGCACGACTTGCGGGTATTGTGAGTTAAGTTGTGCTGAAAAAGATACTTTAAAATTATTTCGTAGT
GGAATGGAGTTTAGAGCTTCTTATTTTGAATATCAAACTATGGCAAAAGATGAGCTTTTTGCCTGTATAGAATGTGGTAA
AGAATTTGCCACCAAAAAAGCTGTAGAAAAAATAGCCAATTTAATGAAGCCTAAATTTGGTAACGATGAAAATAAAATCA
AAACACTTTATTGCTGTGCAGATTGTAAGGCAAAAGTGATGATAAAAGCAATGGGTTTTGCGGGGCAAAATTAG

Upstream 100 bases:

>100_bases
GGAAAAGTTCTAAATTTGTTCATCTTAAGCCTTAAGAAAATATTTGGTTATTTTAACATAGAATTTATAAAATGATGTTT
TAAAGAGATTAAGGAAGATA

Downstream 100 bases:

>100_bases
ATCTTAATTTTGCCTTCTAGTTCTTCTTTGTTTGTAAGTTTGCTATCAAATTTAACAACAAGATTTTTAGAGTTTTTATA
AATATCTACCACCCCTAAAT

Product: iron-sulfur cluster-binding domain-containing protein

Products: CO2; H2; oxidized ferredoxin + [C]

Alternate protein names: Polyferredoxins

Number of amino acids: Translated: 557; Mature: 557

Protein sequence:

>557_residues
MQDFIYIKNDVLIPLPDAIEILDQANDKEALICNDKNQKAQIYAPEINFYLKNSQDEILEQSKNVLTLYEARASVYDLGL
DLEQSKEVQNRLILVDSDTQTVEFLKEHGFKVIALSSAEILAVFGSVGELCAVVKNQGEEVEIDFDFLLFKAEDLSVVRK
DFTRQSGCYNLLNFENLEALLEFLQSKSPKYPYKTYISYNASVCQYHERRSEHCAKCAEICPTVAILKDDENKHLEFSQV
DCLGCGGCISVCPSGSLDYAPMPRESFFTLCEFYKDKKILIIPKKMSLENLNLALPKDVLPFMIEGEKWLSSMHFLTLLQ
NSGANLVFYTDFVSRGSNEAIVLLNTFFERKFQKKAIFVAKDEKELQNVLKEQEFIQDLKYDFHNNILTTRENFAKRMQE
MIKNEDFGSIESGEWLRYGKVEINPNTCTLCLSCVGACNVGALIADTKENALKFNASLCTTCGYCELSCAEKDTLKLFRS
GMEFRASYFEYQTMAKDELFACIECGKEFATKKAVEKIANLMKPKFGNDENKIKTLYCCADCKAKVMIKAMGFAGQN

Sequences:

>Translated_557_residues
MQDFIYIKNDVLIPLPDAIEILDQANDKEALICNDKNQKAQIYAPEINFYLKNSQDEILEQSKNVLTLYEARASVYDLGL
DLEQSKEVQNRLILVDSDTQTVEFLKEHGFKVIALSSAEILAVFGSVGELCAVVKNQGEEVEIDFDFLLFKAEDLSVVRK
DFTRQSGCYNLLNFENLEALLEFLQSKSPKYPYKTYISYNASVCQYHERRSEHCAKCAEICPTVAILKDDENKHLEFSQV
DCLGCGGCISVCPSGSLDYAPMPRESFFTLCEFYKDKKILIIPKKMSLENLNLALPKDVLPFMIEGEKWLSSMHFLTLLQ
NSGANLVFYTDFVSRGSNEAIVLLNTFFERKFQKKAIFVAKDEKELQNVLKEQEFIQDLKYDFHNNILTTRENFAKRMQE
MIKNEDFGSIESGEWLRYGKVEINPNTCTLCLSCVGACNVGALIADTKENALKFNASLCTTCGYCELSCAEKDTLKLFRS
GMEFRASYFEYQTMAKDELFACIECGKEFATKKAVEKIANLMKPKFGNDENKIKTLYCCADCKAKVMIKAMGFAGQN
>Mature_557_residues
MQDFIYIKNDVLIPLPDAIEILDQANDKEALICNDKNQKAQIYAPEINFYLKNSQDEILEQSKNVLTLYEARASVYDLGL
DLEQSKEVQNRLILVDSDTQTVEFLKEHGFKVIALSSAEILAVFGSVGELCAVVKNQGEEVEIDFDFLLFKAEDLSVVRK
DFTRQSGCYNLLNFENLEALLEFLQSKSPKYPYKTYISYNASVCQYHERRSEHCAKCAEICPTVAILKDDENKHLEFSQV
DCLGCGGCISVCPSGSLDYAPMPRESFFTLCEFYKDKKILIIPKKMSLENLNLALPKDVLPFMIEGEKWLSSMHFLTLLQ
NSGANLVFYTDFVSRGSNEAIVLLNTFFERKFQKKAIFVAKDEKELQNVLKEQEFIQDLKYDFHNNILTTRENFAKRMQE
MIKNEDFGSIESGEWLRYGKVEINPNTCTLCLSCVGACNVGALIADTKENALKFNASLCTTCGYCELSCAEKDTLKLFRS
GMEFRASYFEYQTMAKDELFACIECGKEFATKKAVEKIANLMKPKFGNDENKIKTLYCCADCKAKVMIKAMGFAGQN

Specific function: Probable Electron Transfer Protein For Hydrogenase 3 [C]

COG id: COG1145

COG function: function code C; Ferredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 63323; Mature: 63323

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
4.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDFIYIKNDVLIPLPDAIEILDQANDKEALICNDKNQKAQIYAPEINFYLKNSQDEILE
CCCEEEEECCEEEECCHHHHHHHCCCCCCEEEECCCCCCEEEEECCEEEEEECCHHHHHH
QSKNVLTLYEARASVYDLGLDLEQSKEVQNRLILVDSDTQTVEFLKEHGFKVIALSSAEI
HCCCEEEEEHHHHHHHHCCCCCHHHHHHCCCEEEEECCHHHHHHHHHCCCEEEEECCCHH
LAVFGSVGELCAVVKNQGEEVEIDFDFLLFKAEDLSVVRKDFTRQSGCYNLLNFENLEAL
HHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCHHHHHHHHHHHCCCCEECCCHHHHHHH
LEFLQSKSPKYPYKTYISYNASVCQYHERRSEHCAKCAEICPTVAILKDDENKHLEFSQV
HHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEECCC
DCLGCGGCISVCPSGSLDYAPMPRESFFTLCEFYKDKKILIIPKKMSLENLNLALPKDVL
CEECCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCEECCCCCC
PFMIEGEKWLSSMHFLTLLQNSGANLVFYTDFVSRGSNEAIVLLNTFFERKFQKKAIFVA
CEEECCHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCEEEEEEHHHHHHHHHCEEEEE
KDEKELQNVLKEQEFIQDLKYDFHNNILTTRENFAKRMQEMIKNEDFGSIESGEWLRYGK
CCHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE
VEINPNTCTLCLSCVGACNVGALIADTKENALKFNASLCTTCGYCELSCAEKDTLKLFRS
EEECCCHHHHHHHHHHCCCCCEEEECCCCCCEEECCHHHCCCCCEEEECCCHHHHHHHHC
GMEFRASYFEYQTMAKDELFACIECGKEFATKKAVEKIANLMKPKFGNDENKIKTLYCCA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEC
DCKAKVMIKAMGFAGQN
CCCCEEEEEEECCCCCC
>Mature Secondary Structure
MQDFIYIKNDVLIPLPDAIEILDQANDKEALICNDKNQKAQIYAPEINFYLKNSQDEILE
CCCEEEEECCEEEECCHHHHHHHCCCCCCEEEECCCCCCEEEEECCEEEEEECCHHHHHH
QSKNVLTLYEARASVYDLGLDLEQSKEVQNRLILVDSDTQTVEFLKEHGFKVIALSSAEI
HCCCEEEEEHHHHHHHHCCCCCHHHHHHCCCEEEEECCHHHHHHHHHCCCEEEEECCCHH
LAVFGSVGELCAVVKNQGEEVEIDFDFLLFKAEDLSVVRKDFTRQSGCYNLLNFENLEAL
HHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCHHHHHHHHHHHCCCCEECCCHHHHHHH
LEFLQSKSPKYPYKTYISYNASVCQYHERRSEHCAKCAEICPTVAILKDDENKHLEFSQV
HHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEECCC
DCLGCGGCISVCPSGSLDYAPMPRESFFTLCEFYKDKKILIIPKKMSLENLNLALPKDVL
CEECCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCEECCCCCC
PFMIEGEKWLSSMHFLTLLQNSGANLVFYTDFVSRGSNEAIVLLNTFFERKFQKKAIFVA
CEEECCHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCEEEEEEHHHHHHHHHCEEEEE
KDEKELQNVLKEQEFIQDLKYDFHNNILTTRENFAKRMQEMIKNEDFGSIESGEWLRYGK
CCHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE
VEINPNTCTLCLSCVGACNVGALIADTKENALKFNASLCTTCGYCELSCAEKDTLKLFRS
EEECCCHHHHHHHHHHCCCCCEEEECCCCCCEEECCHHHCCCCCEEEECCCHHHHHHHHC
GMEFRASYFEYQTMAKDELFACIECGKEFATKKAVEKIANLMKPKFGNDENKIKTLYCCA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEC
DCKAKVMIKAMGFAGQN
CCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: formate; Proton; reduced ferredoxin [C]

Specific reaction: formate = CO2 + H2 Proton + reduced ferredoxin = H2 + oxidized ferredoxin [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA