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The map label for this gene is ykkC [H]

Identifier: 153951921

GI number: 153951921

Start: 1464390

End: 1464728

Strand: Direct

Name: ykkC [H]

Synonym: JJD26997_1655

Alternate gene names: 153951921

Gene position: 1464390-1464728 (Clockwise)

Preceding gene: 153951219

Following gene: 153951026

Centisome position: 79.37

GC content: 29.5

Gene sequence:

>339_bases
GTGAATGAAAAATTCAATATCAATATAGCTTGGTTTTTAATAATCTTAGGCGGAATTATAGAATGCTTTTGGGTAAGCGG
ACTTAAGTATTCTACAGAAATTTGGCATTATATTTTAACAGCCATTGGAGTTTGTATTTCTTTTACTTGCTTTTTAAAAG
CTTGTGAAAGACTAGAAATAAGTATTACTTATAGTGTTTTTGTAGGCATTGGCACTATCGGAGTGGTTTTAAATGAAATG
TTTATTTTTAACGAAGCTGTTTCTATAGTTAAACTTGTGCTTATAGCGATTTTACTTTTAAGCATTATAGCCCTTAAATG
GGTAAGTAAGAAAGCTTAA

Upstream 100 bases:

>100_bases
ATATCTAATTTTGGCTTATGGAAAAGTAAATTTATAGCTTCTTTTAATTTCTTTAAGATATAATTTGTTTTACAAATATT
ACGTTAATTTAAGGCTTCAT

Downstream 100 bases:

>100_bases
TATGGAATGGTTTTATTTGTTTTTAGCTACCGCTTGTGAAATTTTTGGCGTGGTGATCATGAAAAAACTTGTAAGCACTA
AAAATAAGCTTTACCTTTTG

Product: SMR family multidrug efflux pump

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 112; Mature: 112

Protein sequence:

>112_residues
MNEKFNINIAWFLIILGGIIECFWVSGLKYSTEIWHYILTAIGVCISFTCFLKACERLEISITYSVFVGIGTIGVVLNEM
FIFNEAVSIVKLVLIAILLLSIIALKWVSKKA

Sequences:

>Translated_112_residues
MNEKFNINIAWFLIILGGIIECFWVSGLKYSTEIWHYILTAIGVCISFTCFLKACERLEISITYSVFVGIGTIGVVLNEM
FIFNEAVSIVKLVLIAILLLSIIALKWVSKKA
>Mature_112_residues
MNEKFNINIAWFLIILGGIIECFWVSGLKYSTEIWHYILTAIGVCISFTCFLKACERLEISITYSVFVGIGTIGVVLNEM
FIFNEAVSIVKLVLIAILLLSIIALKWVSKKA

Specific function: Part of a multidrug efflux pump. Confers resistance to a broad range of toxic compounds such as cationic dyes, neutral and anionic antimicrobials [H]

COG id: COG2076

COG function: function code P; Membrane transporters of cations and cationic drugs

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small multidrug resistance (SMR) protein family. YkkC/ykkD (TC 2.A.7.1.5) subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000390 [H]

Pfam domain/function: PF00893 Multi_Drug_Res [H]

EC number: NA

Molecular weight: Translated: 12594; Mature: 12594

Theoretical pI: Translated: 7.92; Mature: 7.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEKFNINIAWFLIILGGIIECFWVSGLKYSTEIWHYILTAIGVCISFTCFLKACERLEI
CCCEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SITYSVFVGIGTIGVVLNEMFIFNEAVSIVKLVLIAILLLSIIALKWVSKKA
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNEKFNINIAWFLIILGGIIECFWVSGLKYSTEIWHYILTAIGVCISFTCFLKACERLEI
CCCEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SITYSVFVGIGTIGVVLNEMFIFNEAVSIVKLVLIAILLLSIIALKWVSKKA
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA