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The map label for this gene is aer [H]

Identifier: 153951873

GI number: 153951873

Start: 488192

End: 488692

Strand: Direct

Name: aer [H]

Synonym: JJD26997_0540

Alternate gene names: 153951873

Gene position: 488192-488692 (Clockwise)

Preceding gene: 153952258

Following gene: 153951262

Centisome position: 26.46

GC content: 27.35

Gene sequence:

>501_bases
ATGTCAAGGGAAATTTTTTTACAAGAAGATAGTTTAATTACTTCTAAAACAGATTTAAAAGGTAAAATAGTTTATGCAAA
CGATGATTTTTTAAAATATGCAGGTTATAGTACTATGGGTGAAGTTTTAAATAAACCTCATAACATAGTAAGACATAAAG
AGATGCCAAAAACTATTTTTAAATATTTATGGGATTATATGAAAGAAGGCAAAGAAATTTTTGCTTATGTAAAAAATAAA
ACCAAAGATAACAATTACTACTGGGTTTTTGCAAATGTAACTCCATCAATAGACATTAATAACAATATCATAGGTTATTA
TTCTGTTCGTCGTATGCCAAATAAAAGTGCTATTTCCACAATAGAAAGCCTTTATAGTGATCTTTTAAGAGTAGAACAGC
AACAAGGCTTAAACAAGAGTGTTGAGATGCTTGAAAATTTCTGTAAAGATGCAGATAAAACTTATAATGAGTTAATTTTC
TCTCTTCAAGAAGCTAAATGA

Upstream 100 bases:

>100_bases
AAAAAGCTTATGATGTGATTGTAAATGATATTAAATCACTAGAGCAAAGGAGTGCTGAAATCTTAGCAAAATTAAAAATA
TAAATTAAGAAGGTGGAAAA

Downstream 100 bases:

>100_bases
ATTTTTGTTAGACTTAAAACGAGTTTGTTTTAAGTCTAAATATTATATAATCTTTCTTTTTAAAATTCACATTTCTCAAG
GCAAAATATGTTTGATGTCA

Product: methyl-accepting chemotaxis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MSREIFLQEDSLITSKTDLKGKIVYANDDFLKYAGYSTMGEVLNKPHNIVRHKEMPKTIFKYLWDYMKEGKEIFAYVKNK
TKDNNYYWVFANVTPSIDINNNIIGYYSVRRMPNKSAISTIESLYSDLLRVEQQQGLNKSVEMLENFCKDADKTYNELIF
SLQEAK

Sequences:

>Translated_166_residues
MSREIFLQEDSLITSKTDLKGKIVYANDDFLKYAGYSTMGEVLNKPHNIVRHKEMPKTIFKYLWDYMKEGKEIFAYVKNK
TKDNNYYWVFANVTPSIDINNNIIGYYSVRRMPNKSAISTIESLYSDLLRVEQQQGLNKSVEMLENFCKDADKTYNELIF
SLQEAK
>Mature_165_residues
SREIFLQEDSLITSKTDLKGKIVYANDDFLKYAGYSTMGEVLNKPHNIVRHKEMPKTIFKYLWDYMKEGKEIFAYVKNKT
KDNNYYWVFANVTPSIDINNNIIGYYSVRRMPNKSAISTIESLYSDLLRVEQQQGLNKSVEMLENFCKDADKTYNELIFS
LQEAK

Specific function: Signal transducer for aerotaxis. The aerotactic response is the accumulation of cells around air bubbles. The nature of the sensory stimulus detected by this protein is the proton motive force or cellular redox state. It uses a FAD prosthetic group as a r

COG id: COG2202

COG function: function code T; FOG: PAS/PAC domain

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1789453, Length=122, Percent_Identity=39.344262295082, Blast_Score=100, Evalue=9e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF08447 PAS_3 [H]

EC number: NA

Molecular weight: Translated: 19486; Mature: 19355

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSREIFLQEDSLITSKTDLKGKIVYANDDFLKYAGYSTMGEVLNKPHNIVRHKEMPKTIF
CCCCEEEECCCEEECCCCCCEEEEEECCCHHHHCCHHHHHHHHCCCHHHHHHHCCHHHHH
KYLWDYMKEGKEIFAYVKNKTKDNNYYWVFANVTPSIDINNNIIGYYSVRRMPNKSAIST
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEECCCCEEEEEEECCCCCHHHHHH
IESLYSDLLRVEQQQGLNKSVEMLENFCKDADKTYNELIFSLQEAK
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SREIFLQEDSLITSKTDLKGKIVYANDDFLKYAGYSTMGEVLNKPHNIVRHKEMPKTIF
CCCEEEECCCEEECCCCCCEEEEEECCCHHHHCCHHHHHHHHCCCHHHHHHHCCHHHHH
KYLWDYMKEGKEIFAYVKNKTKDNNYYWVFANVTPSIDINNNIIGYYSVRRMPNKSAIST
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEECCCCEEEEEEECCCCCHHHHHH
IESLYSDLLRVEQQQGLNKSVEMLENFCKDADKTYNELIFSLQEAK
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 9190831; 9380671 [H]