Click here to switch to the map view.

The map label for this gene is atpC [H]

Identifier: 153951408

GI number: 153951408

Start: 117238

End: 117627

Strand: Direct

Name: atpC [H]

Synonym: JJD26997_0115

Alternate gene names: 153951408

Gene position: 117238-117627 (Clockwise)

Preceding gene: 153951038

Following gene: 153952561

Centisome position: 6.35

GC content: 36.15

Gene sequence:

>390_bases
ATGCAGGATTTAATATCTTTAGAAATAGTAACCCCTCTAGGAATGATTTATCAAGGAGAGGTAAAGTCCGTTACCCTACC
CGGAAGTGAGGGAGAATTTGGTGTTTTAAGGGGGCATGCGAGTTTAGTGGCTTCTTTAAAATCTGGAGTAATTGATATTG
AAAAAGCTGATTTAAATCATGAATTAATTGCTATTGATGCTGGACATGCAAAGGTAGATGAAGATAAGATTTGCGTGTTA
GCGAAGGGTGCGGTTTGGGTTTGTGGAAGTGATGAAAGTGAGATTGAAAAAAATCTTGCTCAAGCAAAAGATTTGATTAA
ATCTATGAGTTCTGATAATGCAGCTTTAGCAGTAACTTTTTCAAAACTTGATAATGCAAGGATGCATTAA

Upstream 100 bases:

>100_bases
ATATTGATGAGGCAATTGCTAAGGCAGAAACTCTGAGGGAGATTAGTAGAGGTGATACTTGCTTAGATAATTGTAAGGTT
GAACAAAAAAAGGCTAATTG

Downstream 100 bases:

>100_bases
TGAATTTTGAAGCTATATTTCATTTTTTCAATAGTTCAAGTATTATTACTTATATAGTTTTATTATGGCTTTCTTTATAT
TTTATTTTAGCATTTAGTAT

Product: F0F1 ATP synthase subunit epsilon

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F1 sector epsilon subunit; F-ATPase epsilon subunit [H]

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MQDLISLEIVTPLGMIYQGEVKSVTLPGSEGEFGVLRGHASLVASLKSGVIDIEKADLNHELIAIDAGHAKVDEDKICVL
AKGAVWVCGSDESEIEKNLAQAKDLIKSMSSDNAALAVTFSKLDNARMH

Sequences:

>Translated_129_residues
MQDLISLEIVTPLGMIYQGEVKSVTLPGSEGEFGVLRGHASLVASLKSGVIDIEKADLNHELIAIDAGHAKVDEDKICVL
AKGAVWVCGSDESEIEKNLAQAKDLIKSMSSDNAALAVTFSKLDNARMH
>Mature_129_residues
MQDLISLEIVTPLGMIYQGEVKSVTLPGSEGEFGVLRGHASLVASLKSGVIDIEKADLNHELIAIDAGHAKVDEDKICVL
AKGAVWVCGSDESEIEKNLAQAKDLIKSMSSDNAALAVTFSKLDNARMH

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane [H]

COG id: COG0355

COG function: function code C; F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit)

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase epsilon chain family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001469
- InterPro:   IPR020546
- ProDom:   PD000944 [H]

Pfam domain/function: PF02823 ATP-synt_DE_N [H]

EC number: 3.6.3.14

Molecular weight: Translated: 13733; Mature: 13733

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDLISLEIVTPLGMIYQGEVKSVTLPGSEGEFGVLRGHASLVASLKSGVIDIEKADLNH
CCCCEEEEEECCCCEEEECCCCEEEECCCCCCEEEEEHHHHHHHHHHCCEEEEEECCCCC
ELIAIDAGHAKVDEDKICVLAKGAVWVCGSDESEIEKNLAQAKDLIKSMSSDNAALAVTF
EEEEEECCCCCCCCCCEEEEECCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
SKLDNARMH
ECCCCCCCC
>Mature Secondary Structure
MQDLISLEIVTPLGMIYQGEVKSVTLPGSEGEFGVLRGHASLVASLKSGVIDIEKADLNH
CCCCEEEEEECCCCEEEECCCCEEEECCCCCCEEEEEHHHHHHHHHHCCEEEEEECCCCC
ELIAIDAGHAKVDEDKICVLAKGAVWVCGSDESEIEKNLAQAKDLIKSMSSDNAALAVTF
EEEEEECCCCCCCCCCEEEEECCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
SKLDNARMH
ECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA