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The map label for this gene is atpD

Identifier: 153951038

GI number: 153951038

Start: 115784

End: 117238

Strand: Direct

Name: atpD

Synonym: JJD26997_0114

Alternate gene names: 153951038

Gene position: 115784-117238 (Clockwise)

Preceding gene: 153952196

Following gene: 153951408

Centisome position: 6.28

GC content: 35.05

Gene sequence:

>1455_bases
ATGCAAGGATTTATTTCACAGGTATTAGGTCCGGTTGTTGATGTAGATTTTAACGACTATTTACCTCAAATTAATGAAGC
AATTGTTGTAAATTTTGAAAGCGAAGGAAAAAAACATAAACTTGTTTTAGAAGTAGCAGCTCATTTAGGAGATAATAGAG
TTAGAACTATTGCTATGGATATGACAGATGGTTTGGTAAGGGGCTTAAAAGCTGAGGCTTTAGGTGCTCCTATTAGTGTT
CCTGTTGGTGAGAAAGTTTTAGGAAGAATTTTCAATGTTACTGGAGATTTGATCGATGAAGGTGAAGAAATTCCTTTTGA
TAAAAAATGGGCAATTCATAGAGATCCGCCAGCTTTTGAAGATCAAAGCACAAAAAGTGAGATTTTTGAAACAGGGATTA
AAGTTGTAGATTTACTTGCTCCTTATGCAAAAGGTGGTAAAGTAGGTCTTTTTGGTGGTGCAGGTGTTGGTAAAACTGTT
ATTATTATGGAGCTTATTCACAATGTTGCATTTAAGCATAGCGGCTATTCTGTATTTGCAGGTGTGGGTGAGAGAACTCG
TGAAGGAAATGACCTTTATAATGAAATGAAAGAAAGTAATGTTTTAGACAAAGTTGCTCTATGTTATGGACAAATGAATG
AACCACCAGGAGCAAGAAATCGTATTGCTTTAACAGGTTTAACAATGGCTGAGTATTTTAGAGATGAAATGGGTCTTGAT
GTGCTTATGTTTATTGATAATATCTTTAGATTTTCACAATCAGGTTCTGAAATGTCAGCACTTTTAGGAAGAATTCCATC
AGCTGTGGGTTATCAACCAACCCTAGCAAGTGAAATGGGTAAATTCCAAGAAAGAATTACTTCAACTAAAAAAGGCTCAA
TCACTTCAGTTCAAGCTGTTTATGTTCCAGCTGATGACTTAACCGACCCAGCTCCAGCAACTGTTTTTGCTCACTTAGAT
GCTACAACAGTTTTAAATAGAGCTATTGCTGAAAAAGGTATTTATCCTGCAGTTGACCCACTTGATTCAACTTCAAGAAT
GCTTGATCCAAATATCATTGGAGAAGAACATTATAAAGTTGCTCGTGGTGTTCAATCAGTACTTCAAAAATACAAAGATT
TACAAGATATCATTGCCATTTTAGGTATGGATGAGCTTAGCGAAGAGGATAAACTTGTAGTTGAAAGAGCAAGAAAGATT
GAAAAATTCTTATCACAACCATTTTTCGTTGCAGAAGTTTTCACAGGTAGCCCAGGAAAATATATAAACCTTGAAGATAC
AATAGCAGGATTTAAAGGAATTTTAGAAGGTAAATATGATCATTTACCAGAAAATGCTTTCTATATGGTAGGAAATATTG
ATGAGGCAATTGCTAAGGCAGAAACTCTGAGGGAGATTAGTAGAGGTGATACTTGCTTAGATAATTGTAAGGTTGAACAA
AAAAAGGCTAATTGA

Upstream 100 bases:

>100_bases
TTATAACAAAGCAAGACAAGAATCCATTACTACTGAGCTTATAGAAATTATCAGTGGTGTTGAATCAATGAAATAGTAAA
TTTTAAGGAGAAGATAAATA

Downstream 100 bases:

>100_bases
TGCAGGATTTAATATCTTTAGAAATAGTAACCCCTCTAGGAATGATTTATCAAGGAGAGGTAAAGTCCGTTACCCTACCC
GGAAGTGAGGGAGAATTTGG

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta

Number of amino acids: Translated: 484; Mature: 484

Protein sequence:

>484_residues
MQGFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKHKLVLEVAAHLGDNRVRTIAMDMTDGLVRGLKAEALGAPISV
PVGEKVLGRIFNVTGDLIDEGEEIPFDKKWAIHRDPPAFEDQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTV
IIMELIHNVAFKHSGYSVFAGVGERTREGNDLYNEMKESNVLDKVALCYGQMNEPPGARNRIALTGLTMAEYFRDEMGLD
VLMFIDNIFRFSQSGSEMSALLGRIPSAVGYQPTLASEMGKFQERITSTKKGSITSVQAVYVPADDLTDPAPATVFAHLD
ATTVLNRAIAEKGIYPAVDPLDSTSRMLDPNIIGEEHYKVARGVQSVLQKYKDLQDIIAILGMDELSEEDKLVVERARKI
EKFLSQPFFVAEVFTGSPGKYINLEDTIAGFKGILEGKYDHLPENAFYMVGNIDEAIAKAETLREISRGDTCLDNCKVEQ
KKAN

Sequences:

>Translated_484_residues
MQGFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKHKLVLEVAAHLGDNRVRTIAMDMTDGLVRGLKAEALGAPISV
PVGEKVLGRIFNVTGDLIDEGEEIPFDKKWAIHRDPPAFEDQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTV
IIMELIHNVAFKHSGYSVFAGVGERTREGNDLYNEMKESNVLDKVALCYGQMNEPPGARNRIALTGLTMAEYFRDEMGLD
VLMFIDNIFRFSQSGSEMSALLGRIPSAVGYQPTLASEMGKFQERITSTKKGSITSVQAVYVPADDLTDPAPATVFAHLD
ATTVLNRAIAEKGIYPAVDPLDSTSRMLDPNIIGEEHYKVARGVQSVLQKYKDLQDIIAILGMDELSEEDKLVVERARKI
EKFLSQPFFVAEVFTGSPGKYINLEDTIAGFKGILEGKYDHLPENAFYMVGNIDEAIAKAETLREISRGDTCLDNCKVEQ
KKAN
>Mature_484_residues
MQGFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKHKLVLEVAAHLGDNRVRTIAMDMTDGLVRGLKAEALGAPISV
PVGEKVLGRIFNVTGDLIDEGEEIPFDKKWAIHRDPPAFEDQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTV
IIMELIHNVAFKHSGYSVFAGVGERTREGNDLYNEMKESNVLDKVALCYGQMNEPPGARNRIALTGLTMAEYFRDEMGLD
VLMFIDNIFRFSQSGSEMSALLGRIPSAVGYQPTLASEMGKFQERITSTKKGSITSVQAVYVPADDLTDPAPATVFAHLD
ATTVLNRAIAEKGIYPAVDPLDSTSRMLDPNIIGEEHYKVARGVQSVLQKYKDLQDIIAILGMDELSEEDKLVVERARKI
EKFLSQPFFVAEVFTGSPGKYINLEDTIAGFKGILEGKYDHLPENAFYMVGNIDEAIAKAETLREISRGDTCLDNCKVEQ
KKAN

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family

Homologues:

Organism=Homo sapiens, GI32189394, Length=469, Percent_Identity=71.2153518123667, Blast_Score=663, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=321, Percent_Identity=28.9719626168224, Blast_Score=127, Evalue=3e-29,
Organism=Homo sapiens, GI19913428, Length=431, Percent_Identity=24.8259860788863, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI19913426, Length=431, Percent_Identity=24.5939675174014, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI50345984, Length=284, Percent_Identity=25.3521126760563, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI4757810, Length=284, Percent_Identity=25.3521126760563, Blast_Score=91, Evalue=2e-18,
Organism=Escherichia coli, GI1790170, Length=462, Percent_Identity=69.4805194805195, Blast_Score=654, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=367, Percent_Identity=26.7029972752044, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1790172, Length=430, Percent_Identity=23.2558139534884, Blast_Score=100, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI25144756, Length=467, Percent_Identity=68.7366167023555, Blast_Score=640, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565854, Length=322, Percent_Identity=29.5031055900621, Blast_Score=135, Evalue=7e-32,
Organism=Caenorhabditis elegans, GI17570191, Length=422, Percent_Identity=24.8815165876777, Blast_Score=125, Evalue=4e-29,
Organism=Caenorhabditis elegans, GI17510931, Length=416, Percent_Identity=25.2403846153846, Blast_Score=122, Evalue=5e-28,
Organism=Caenorhabditis elegans, GI71988080, Length=284, Percent_Identity=24.2957746478873, Blast_Score=87, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI71988063, Length=347, Percent_Identity=23.342939481268, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI71988074, Length=329, Percent_Identity=22.1884498480243, Blast_Score=69, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6322581, Length=463, Percent_Identity=69.3304535637149, Blast_Score=645, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=422, Percent_Identity=26.0663507109005, Blast_Score=125, Evalue=2e-29,
Organism=Saccharomyces cerevisiae, GI6320016, Length=233, Percent_Identity=26.6094420600858, Blast_Score=87, Evalue=8e-18,
Organism=Saccharomyces cerevisiae, GI6319370, Length=346, Percent_Identity=23.6994219653179, Blast_Score=85, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24638766, Length=467, Percent_Identity=71.948608137045, Blast_Score=661, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=475, Percent_Identity=64.8421052631579, Blast_Score=608, Evalue=1e-174,
Organism=Drosophila melanogaster, GI20129479, Length=387, Percent_Identity=28.1653746770026, Blast_Score=133, Evalue=3e-31,
Organism=Drosophila melanogaster, GI24583992, Length=321, Percent_Identity=28.6604361370716, Blast_Score=130, Evalue=2e-30,
Organism=Drosophila melanogaster, GI24583988, Length=321, Percent_Identity=28.3489096573209, Blast_Score=129, Evalue=4e-30,
Organism=Drosophila melanogaster, GI24583986, Length=321, Percent_Identity=28.3489096573209, Blast_Score=129, Evalue=4e-30,
Organism=Drosophila melanogaster, GI24583984, Length=321, Percent_Identity=28.3489096573209, Blast_Score=129, Evalue=4e-30,
Organism=Drosophila melanogaster, GI281361666, Length=423, Percent_Identity=25.531914893617, Blast_Score=120, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24646341, Length=423, Percent_Identity=25.531914893617, Blast_Score=120, Evalue=2e-27,
Organism=Drosophila melanogaster, GI17136796, Length=423, Percent_Identity=25.531914893617, Blast_Score=120, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24638768, Length=94, Percent_Identity=55.3191489361702, Blast_Score=93, Evalue=5e-19,
Organism=Drosophila melanogaster, GI24658560, Length=284, Percent_Identity=24.2957746478873, Blast_Score=89, Evalue=9e-18,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): ATPB_CAMJD (A7H1I1)

Other databases:

- EMBL:   CP000768
- RefSeq:   YP_001397361.1
- STRING:   A7H1I1
- GeneID:   5389218
- GenomeReviews:   CP000768_GR
- KEGG:   cjd:JJD26997_0114
- eggNOG:   COG0055
- HOGENOM:   HBG565875
- OMA:   LTIAERF
- ProtClustDB:   PRK09280
- BioCyc:   CJEJ360109:JJD26997_0114-MONOMER
- HAMAP:   MF_01347
- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100
- PANTHER:   PTHR15184:SF8
- SMART:   SM00382
- TIGRFAMs:   TIGR01039

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N; SSF47917 ATPase_a/b_C; SSF50615 ATPase_a/b_N

EC number: =3.6.3.14

Molecular weight: Translated: 53079; Mature: 53079

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKHKLVLEVAAHLGDNRVRTIAMD
CCHHHHHHHHHHEECCHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEH
MTDGLVRGLKAEALGAPISVPVGEKVLGRIFNVTGDLIDEGEEIPFDKKWAIHRDPPAFE
HHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
DQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTVIIMELIHNVAFKHSGYSVFA
CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
GVGERTREGNDLYNEMKESNVLDKVALCYGQMNEPPGARNRIALTGLTMAEYFRDEMGLD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCH
VLMFIDNIFRFSQSGSEMSALLGRIPSAVGYQPTLASEMGKFQERITSTKKGSITSVQAV
HHHHHHHHHHHCCCCHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEE
YVPADDLTDPAPATVFAHLDATTVLNRAIAEKGIYPAVDPLDSTSRMLDPNIIGEEHYKV
EECCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCHHHHHH
ARGVQSVLQKYKDLQDIIAILGMDELSEEDKLVVERARKIEKFLSQPFFVAEVFTGSPGK
HHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC
YINLEDTIAGFKGILEGKYDHLPENAFYMVGNIDEAIAKAETLREISRGDTCLDNCKVEQ
EEEHHHHHHHHHHHHCCHHHCCCCCCEEEECCHHHHHHHHHHHHHHHCCCHHHHHCCCCC
KKAN
CCCC
>Mature Secondary Structure
MQGFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKHKLVLEVAAHLGDNRVRTIAMD
CCHHHHHHHHHHEECCHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEH
MTDGLVRGLKAEALGAPISVPVGEKVLGRIFNVTGDLIDEGEEIPFDKKWAIHRDPPAFE
HHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
DQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTVIIMELIHNVAFKHSGYSVFA
CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
GVGERTREGNDLYNEMKESNVLDKVALCYGQMNEPPGARNRIALTGLTMAEYFRDEMGLD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCH
VLMFIDNIFRFSQSGSEMSALLGRIPSAVGYQPTLASEMGKFQERITSTKKGSITSVQAV
HHHHHHHHHHHCCCCHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEE
YVPADDLTDPAPATVFAHLDATTVLNRAIAEKGIYPAVDPLDSTSRMLDPNIIGEEHYKV
EECCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCHHHHHH
ARGVQSVLQKYKDLQDIIAILGMDELSEEDKLVVERARKIEKFLSQPFFVAEVFTGSPGK
HHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC
YINLEDTIAGFKGILEGKYDHLPENAFYMVGNIDEAIAKAETLREISRGDTCLDNCKVEQ
EEEHHHHHHHHHHHHCCHHHCCCCCCEEEECCHHHHHHHHHHHHHHHCCCHHHHHCCCCC
KKAN
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA