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The map label for this gene is cydB [H]

Identifier: 153950972

GI number: 153950972

Start: 95001

End: 96125

Strand: Direct

Name: cydB [H]

Synonym: JJD26997_0091

Alternate gene names: 153950972

Gene position: 95001-96125 (Clockwise)

Preceding gene: 153951686

Following gene: 153952003

Centisome position: 5.15

GC content: 32.0

Gene sequence:

>1125_bases
ATGTTTTTTGGTTTAGAACTTGAAGGTTTGCAAATTTATTGGTGGTTGATTTTAAGTTTACTTGGCGGACTTTTAGTTTT
TATGTTTTTTGTTCAAGGTGGACAAACTTTAATCGATGAGCTTAGTAAGGATGAACTTGAAAAAACCATGCTAGTCAATT
CTTTAGGGCGTAAATGGGAGCTCGGTTTTACAACTCTCGTACTTTTTGGTGGAGCAGCTTTTGCGGCTTTTCCACTTTTT
TATAGTACAAGTTTTGGCGGTGCTTATTGGGCTTGGCTTTGTATTTTATTTTGTTTTATCTTGCAAGCTGTAGCTTATGA
ATATCGCAAAAAAGAAAATAATGTTTATGGCTCTAAAACCTATGAAATTTTTCTTAAAATCAATGGCTATTTAGGTGTGT
TTTTAATCGGAGTTGCGGTAAGTAGCTTTTTTAGCGGCTCTGAATTTATCTTAAATGAGCATAATTTTGTTTCTTGGCAA
AATCCTTTGCATGGCTTAGAACTTTTACTTAATCCTTTTAATTATCTCTTAGGCTTAGCTTTAGTATTTTTAGCAAGGCT
TTTAGGTGCAGCGTATTTTATGAACAATATCAATGATGAGAATATCAAAATAAGAGCTATGAAAAAACTCATGGTCAATA
GCATTTTATTTTTACCTTTTTTCTTAGGTTTTTTAGTGTGGATTTTCTTAAAAGATGGTTTTAGTGTAGATGCAAATGGA
GTTGTAAGCATGAGTGCGAATTTGTATTTATATAATTTCTTAAATCAAATGATTTTTGCTATCTTGCTTGTTGTTGGTGT
GATTTTAGTGCTTTTAGGTATGGTTCAAGGAGCAAAAGGTTGCTCTAAAGCTATTTTTACTCTAGGACTTGGAACGGTTT
TAACAGTTTTTGTTTTATTATCAAGCATTGGTTTAGGTCAAAGTGTTTTTTACCCATCTTTAAGTGATTTGCAAAGTTCT
TTAACTTTAAAAAACGCAAGTTCAAGCTATTACACTCTAAGCGTTATGGCTTATGTATCTTTACTTGTACCTTTTGTTTT
AGCTTATATTATCTATGTTTGGAATGCAATGGATAAAGTAAAAATCACACGCGAAGAAATCGCAAACGATGATCACGCAT
ATTAA

Upstream 100 bases:

>100_bases
CCTTATTGATTGCAGAAGTTAAAATCATACTTACTCAGATTAAAAAAGGTTTTGACGCACATGCAGGGCATACTCTACTT
ATGGGCAAAGGAGAAAAATA

Downstream 100 bases:

>100_bases
GGAGAAAAAATGTTACATGCTTTGTTTTTATTGGCTTGGCCTTTAGTAGTTTATCTAAGCTATAAATTTATCATGCTAAA
TATCAATCAATTAGAAAAAG

Product: cytochrome d ubiquinol oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MFFGLELEGLQIYWWLILSLLGGLLVFMFFVQGGQTLIDELSKDELEKTMLVNSLGRKWELGFTTLVLFGGAAFAAFPLF
YSTSFGGAYWAWLCILFCFILQAVAYEYRKKENNVYGSKTYEIFLKINGYLGVFLIGVAVSSFFSGSEFILNEHNFVSWQ
NPLHGLELLLNPFNYLLGLALVFLARLLGAAYFMNNINDENIKIRAMKKLMVNSILFLPFFLGFLVWIFLKDGFSVDANG
VVSMSANLYLYNFLNQMIFAILLVVGVILVLLGMVQGAKGCSKAIFTLGLGTVLTVFVLLSSIGLGQSVFYPSLSDLQSS
LTLKNASSSYYTLSVMAYVSLLVPFVLAYIIYVWNAMDKVKITREEIANDDHAY

Sequences:

>Translated_374_residues
MFFGLELEGLQIYWWLILSLLGGLLVFMFFVQGGQTLIDELSKDELEKTMLVNSLGRKWELGFTTLVLFGGAAFAAFPLF
YSTSFGGAYWAWLCILFCFILQAVAYEYRKKENNVYGSKTYEIFLKINGYLGVFLIGVAVSSFFSGSEFILNEHNFVSWQ
NPLHGLELLLNPFNYLLGLALVFLARLLGAAYFMNNINDENIKIRAMKKLMVNSILFLPFFLGFLVWIFLKDGFSVDANG
VVSMSANLYLYNFLNQMIFAILLVVGVILVLLGMVQGAKGCSKAIFTLGLGTVLTVFVLLSSIGLGQSVFYPSLSDLQSS
LTLKNASSSYYTLSVMAYVSLLVPFVLAYIIYVWNAMDKVKITREEIANDDHAY
>Mature_374_residues
MFFGLELEGLQIYWWLILSLLGGLLVFMFFVQGGQTLIDELSKDELEKTMLVNSLGRKWELGFTTLVLFGGAAFAAFPLF
YSTSFGGAYWAWLCILFCFILQAVAYEYRKKENNVYGSKTYEIFLKINGYLGVFLIGVAVSSFFSGSEFILNEHNFVSWQ
NPLHGLELLLNPFNYLLGLALVFLARLLGAAYFMNNINDENIKIRAMKKLMVNSILFLPFFLGFLVWIFLKDGFSVDANG
VVSMSANLYLYNFLNQMIFAILLVVGVILVLLGMVQGAKGCSKAIFTLGLGTVLTVFVLLSSIGLGQSVFYPSLSDLQSS
LTLKNASSSYYTLSVMAYVSLLVPFVLAYIIYVWNAMDKVKITREEIANDDHAY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=392, Percent_Identity=27.8061224489796, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1787213, Length=384, Percent_Identity=26.3020833333333, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 41941; Mature: 41941

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFGLELEGLQIYWWLILSLLGGLLVFMFFVQGGQTLIDELSKDELEKTMLVNSLGRKWE
CEECEEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEE
LGFTTLVLFGGAAFAAFPLFYSTSFGGAYWAWLCILFCFILQAVAYEYRKKENNVYGSKT
CHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
YEIFLKINGYLGVFLIGVAVSSFFSGSEFILNEHNFVSWQNPLHGLELLLNPFNYLLGLA
EEEEEEECCHHHHHHHHHHHHHHCCCCHHEECCCCEECCCCHHHHHHHHHHHHHHHHHHH
LVFLARLLGAAYFMNNINDENIKIRAMKKLMVNSILFLPFFLGFLVWIFLKDGFSVDANG
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
VVSMSANLYLYNFLNQMIFAILLVVGVILVLLGMVQGAKGCSKAIFTLGLGTVLTVFVLL
EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
SSIGLGQSVFYPSLSDLQSSLTLKNASSSYYTLSVMAYVSLLVPFVLAYIIYVWNAMDKV
HHCCCCCHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
KITREEIANDDHAY
EECHHHHCCCCCCC
>Mature Secondary Structure
MFFGLELEGLQIYWWLILSLLGGLLVFMFFVQGGQTLIDELSKDELEKTMLVNSLGRKWE
CEECEEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEE
LGFTTLVLFGGAAFAAFPLFYSTSFGGAYWAWLCILFCFILQAVAYEYRKKENNVYGSKT
CHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
YEIFLKINGYLGVFLIGVAVSSFFSGSEFILNEHNFVSWQNPLHGLELLLNPFNYLLGLA
EEEEEEECCHHHHHHHHHHHHHHCCCCHHEECCCCEECCCCHHHHHHHHHHHHHHHHHHH
LVFLARLLGAAYFMNNINDENIKIRAMKKLMVNSILFLPFFLGFLVWIFLKDGFSVDANG
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
VVSMSANLYLYNFLNQMIFAILLVVGVILVLLGMVQGAKGCSKAIFTLGLGTVLTVFVLL
EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
SSIGLGQSVFYPSLSDLQSSLTLKNASSSYYTLSVMAYVSLLVPFVLAYIIYVWNAMDKV
HHCCCCCHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
KITREEIANDDHAY
EECHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]