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The map label for this gene is cydA [H]

Identifier: 153951686

GI number: 153951686

Start: 93439

End: 95001

Strand: Direct

Name: cydA [H]

Synonym: JJD26997_0090

Alternate gene names: 153951686

Gene position: 93439-95001 (Clockwise)

Preceding gene: 153951159

Following gene: 153950972

Centisome position: 5.06

GC content: 34.55

Gene sequence:

>1563_bases
ATGAATGAACTTAGTAGCGTTGATTGGTCAAGAGCGCAGTTTGCTTTAACTGCACTTTATCATTTCTTATTTGTGCCTTT
AACTTTAGGCTTATCTTTTATGATTGCTATAATGGAAACCATCTATGTAAAAACTAAAAATGAAAGATGGAAAAAAATCA
CCAAATTTTGGCTTTCATTATTTGCTATAAATTTTGCTATCGGTGTGGCTACAGGTATTATAATGGAATTTGAATTTGGA
ACAAACTGGGCAAATTATAGCTGGTTTGTGGGCGATATTTTTGGCGCACCTTTAGCGGTTGAAGGTATTATGGCATTTTT
CTTAGAGGCTACTTTTTTTGCAGTTATGTTTTTTGGCTGGGATAAAGTAAGCAAGAGTTTTCACTTGCTTTCAACTTGGT
GTGTGGCTATAGGAAGTAATCTTTCTGCTTTTTGGATTTTAGTGGCAAATGGTTGGATGCAATATCCTGTAGGAATGAGC
TTTAACCCTGATACAGCAAGAAATGAAATGCAAAGCTTTTTTGAAGTAGCACTTTCTCCTATGGCTATTTCCAAATTTTT
ACATACCATAGGCAGTGGTTATGTGATTTCAGCTTTATTTGTAATGGGAATTTCAGCTTGGTTTATGTTAAAAGGACGTT
ATATTATCGAAGCTAAAAAAAGCTTAGTTGTGGGAGCTAGTTTTGGTTTGGTTTGTTCAATCTTTTTGTTTTTCAGCGGA
GATGAAAGTGCTTACCGTGTAACTCAAACTCAACCTATGAAACTTGCAGCTATGGAAGGGGTTTATCAAGGCGAACATCG
TGCAGGACTTGTGCCTTTTGGAATTTTAAACCCTAAAAAAACTATCGAAAATAATAAAAGTGTATTTTTATTTGATATTA
CTATACCTTATGCTCTTTCTATATTAGGAAACCGTGATCCAAATTCTTTTGTTCCAGGAATTGAAGATTTAATTTATGGA
AATGAAAGCAAAGGCATAGAACCTATGCAAAATCGTATCGATAGAGGAAAAATCGCTATACAAGCTCTAAAAGACTATAA
ACTTGCTAAAGAAAGCAATGATACAGTGGCTATGGCAAATCACAAATCCATTTTAGAAACTCATTTTAAAGATTTTGGTT
ATGGATATTTGGAAAAACCAAGCGATACTATTCCGCCTGTGGCTTTAACTTTTTATAGCTTTCATATTATGGTTGCTTTA
GGAAGCTTTTTCTTTTTACTTTTCATCGTTACACTTTATCTTGCTATGGCAAATGATATTGAGAAATTTAGAAAAGTACT
TTGGGTGTGTTTGTTGTCCATTCCATTGGGTTATATTGCCGCTGAAGCAGGTTGGATTGTTGCTGAAGTAGGCAGACAAC
CTTGGGCAATTCAAGACTTGCTTCCTGTACATATCGCAGCAACACAACTTGGAAAAGTCAATGTTCAAATTTCATTTTGG
ATTTTTGCAGTACTTTTTACAGCCTTATTGATTGCAGAAGTTAAAATCATACTTACTCAGATTAAAAAAGGTTTTGACGC
ACATGCAGGGCATACTCTACTTATGGGCAAAGGAGAAAAATAA

Upstream 100 bases:

>100_bases
AAAACTTTTTGTTTTTGATGTAAATTTTAATTCTATTTTTAAAAGCGACAAAGAAAAAAGCACTTTTGTACTCAAAAATC
TTACACTCGAAGGAAAATAA

Downstream 100 bases:

>100_bases
TGTTTTTTGGTTTAGAACTTGAAGGTTTGCAAATTTATTGGTGGTTGATTTTAAGTTTACTTGGCGGACTTTTAGTTTTT
ATGTTTTTTGTTCAAGGTGG

Product: cytochrome d ubiquinol oxidase, subunit I

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit I; Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 520; Mature: 520

Protein sequence:

>520_residues
MNELSSVDWSRAQFALTALYHFLFVPLTLGLSFMIAIMETIYVKTKNERWKKITKFWLSLFAINFAIGVATGIIMEFEFG
TNWANYSWFVGDIFGAPLAVEGIMAFFLEATFFAVMFFGWDKVSKSFHLLSTWCVAIGSNLSAFWILVANGWMQYPVGMS
FNPDTARNEMQSFFEVALSPMAISKFLHTIGSGYVISALFVMGISAWFMLKGRYIIEAKKSLVVGASFGLVCSIFLFFSG
DESAYRVTQTQPMKLAAMEGVYQGEHRAGLVPFGILNPKKTIENNKSVFLFDITIPYALSILGNRDPNSFVPGIEDLIYG
NESKGIEPMQNRIDRGKIAIQALKDYKLAKESNDTVAMANHKSILETHFKDFGYGYLEKPSDTIPPVALTFYSFHIMVAL
GSFFFLLFIVTLYLAMANDIEKFRKVLWVCLLSIPLGYIAAEAGWIVAEVGRQPWAIQDLLPVHIAATQLGKVNVQISFW
IFAVLFTALLIAEVKIILTQIKKGFDAHAGHTLLMGKGEK

Sequences:

>Translated_520_residues
MNELSSVDWSRAQFALTALYHFLFVPLTLGLSFMIAIMETIYVKTKNERWKKITKFWLSLFAINFAIGVATGIIMEFEFG
TNWANYSWFVGDIFGAPLAVEGIMAFFLEATFFAVMFFGWDKVSKSFHLLSTWCVAIGSNLSAFWILVANGWMQYPVGMS
FNPDTARNEMQSFFEVALSPMAISKFLHTIGSGYVISALFVMGISAWFMLKGRYIIEAKKSLVVGASFGLVCSIFLFFSG
DESAYRVTQTQPMKLAAMEGVYQGEHRAGLVPFGILNPKKTIENNKSVFLFDITIPYALSILGNRDPNSFVPGIEDLIYG
NESKGIEPMQNRIDRGKIAIQALKDYKLAKESNDTVAMANHKSILETHFKDFGYGYLEKPSDTIPPVALTFYSFHIMVAL
GSFFFLLFIVTLYLAMANDIEKFRKVLWVCLLSIPLGYIAAEAGWIVAEVGRQPWAIQDLLPVHIAATQLGKVNVQISFW
IFAVLFTALLIAEVKIILTQIKKGFDAHAGHTLLMGKGEK
>Mature_520_residues
MNELSSVDWSRAQFALTALYHFLFVPLTLGLSFMIAIMETIYVKTKNERWKKITKFWLSLFAINFAIGVATGIIMEFEFG
TNWANYSWFVGDIFGAPLAVEGIMAFFLEATFFAVMFFGWDKVSKSFHLLSTWCVAIGSNLSAFWILVANGWMQYPVGMS
FNPDTARNEMQSFFEVALSPMAISKFLHTIGSGYVISALFVMGISAWFMLKGRYIIEAKKSLVVGASFGLVCSIFLFFSG
DESAYRVTQTQPMKLAAMEGVYQGEHRAGLVPFGILNPKKTIENNKSVFLFDITIPYALSILGNRDPNSFVPGIEDLIYG
NESKGIEPMQNRIDRGKIAIQALKDYKLAKESNDTVAMANHKSILETHFKDFGYGYLEKPSDTIPPVALTFYSFHIMVAL
GSFFFLLFIVTLYLAMANDIEKFRKVLWVCLLSIPLGYIAAEAGWIVAEVGRQPWAIQDLLPVHIAATQLGKVNVQISFW
IFAVLFTALLIAEVKIILTQIKKGFDAHAGHTLLMGKGEK

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=509, Percent_Identity=45.9724950884086, Blast_Score=419, Evalue=1e-118,
Organism=Escherichia coli, GI1787212, Length=523, Percent_Identity=44.7418738049713, Blast_Score=404, Evalue=1e-114,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 58234; Mature: 58234

Theoretical pI: Translated: 8.08; Mature: 8.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNELSSVDWSRAQFALTALYHFLFVPLTLGLSFMIAIMETIYVKTKNERWKKITKFWLSL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FAINFAIGVATGIIMEFEFGTNWANYSWFVGDIFGAPLAVEGIMAFFLEATFFAVMFFGW
HHHHHHHHHHHHEEEEEECCCCCCCCCEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
DKVSKSFHLLSTWCVAIGSNLSAFWILVANGWMQYPVGMSFNPDTARNEMQSFFEVALSP
HHHCCHHHHHHHHHHHHCCCCCEEEEEEECCCEECCCCCCCCCCHHHHHHHHHHHHHHHH
MAISKFLHTIGSGYVISALFVMGISAWFMLKGRYIIEAKKSLVVGASFGLVCSIFLFFSG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEECHHHHHHHHHHHCCC
DESAYRVTQTQPMKLAAMEGVYQGEHRAGLVPFGILNPKKTIENNKSVFLFDITIPYALS
CCCCEEECCCCCHHHHHHHHHHCCCCCCCCCEEECCCCHHHHCCCCEEEEEEEHHHHHHH
ILGNRDPNSFVPGIEDLIYGNESKGIEPMQNRIDRGKIAIQALKDYKLAKESNDTVAMAN
HHCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEECC
HKSILETHFKDFGYGYLEKPSDTIPPVALTFYSFHIMVALGSFFFLLFIVTLYLAMANDI
HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKFRKVLWVCLLSIPLGYIAAEAGWIVAEVGRQPWAIQDLLPVHIAATQLGKVNVQISFW
HHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHCCCEEEEEHHHH
IFAVLFTALLIAEVKIILTQIKKGFDAHAGHTLLMGKGEK
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
>Mature Secondary Structure
MNELSSVDWSRAQFALTALYHFLFVPLTLGLSFMIAIMETIYVKTKNERWKKITKFWLSL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FAINFAIGVATGIIMEFEFGTNWANYSWFVGDIFGAPLAVEGIMAFFLEATFFAVMFFGW
HHHHHHHHHHHHEEEEEECCCCCCCCCEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
DKVSKSFHLLSTWCVAIGSNLSAFWILVANGWMQYPVGMSFNPDTARNEMQSFFEVALSP
HHHCCHHHHHHHHHHHHCCCCCEEEEEEECCCEECCCCCCCCCCHHHHHHHHHHHHHHHH
MAISKFLHTIGSGYVISALFVMGISAWFMLKGRYIIEAKKSLVVGASFGLVCSIFLFFSG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEECHHHHHHHHHHHCCC
DESAYRVTQTQPMKLAAMEGVYQGEHRAGLVPFGILNPKKTIENNKSVFLFDITIPYALS
CCCCEEECCCCCHHHHHHHHHHCCCCCCCCCEEECCCCHHHHCCCCEEEEEEEHHHHHHH
ILGNRDPNSFVPGIEDLIYGNESKGIEPMQNRIDRGKIAIQALKDYKLAKESNDTVAMAN
HHCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEECC
HKSILETHFKDFGYGYLEKPSDTIPPVALTFYSFHIMVALGSFFFLLFIVTLYLAMANDI
HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKFRKVLWVCLLSIPLGYIAAEAGWIVAEVGRQPWAIQDLLPVHIAATQLGKVNVQISFW
HHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHCCCEEEEEHHHH
IFAVLFTALLIAEVKIILTQIKKGFDAHAGHTLLMGKGEK
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]