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The map label for this gene is trbF [H]

Identifier: 153930573

GI number: 153930573

Start: 10357

End: 11079

Strand: Direct

Name: trbF [H]

Synonym: YpsIP31758_A0051

Alternate gene names: 153930573

Gene position: 10357-11079 (Clockwise)

Preceding gene: 153930569

Following gene: 153930568

Centisome position: 17.65

GC content: 36.65

Gene sequence:

>723_bases
ATGATTTTCAATCTGTTCAAAAAGAAAGAAAAAACTTTAGCGGCTAAAGTTTCTCAAACCGATAACCCCTATTTGAATGC
ACGTCGTACGTGGAATGGTCATGTTTCAGGGGTTATGTCAGCTATTCAGATCTGGCAGGTAGTTGGCATACTGGCTCTCC
TAATTGCTTTAACAGCCGTAGGAGGAATAATTAAGATTGGTAGCCAGTCAAAATTTGTTCCTCTTGTTTTTCAGCAAGAT
AGTACGGGAAATACTCTTTCAGTAACTCGCGCTGACAAGATACCTGATGCAAAAATTGAAGACTATCGGACTACAGCAGC
TAAGTTTATTGAAAACATTCGGCTAGTTACCGCTGATTCAAGTTTACAAAGAAAGGCTGTTTTACAAACTTATTCTTATT
TGTCCGCGAAAGATCCATCAACAATAAAAGCCAATGAATACCTTAATAGCAGTAAAGAAGCCAATCCATTTAATCGGGCA
ACTAAAGAATTAGTCAGTGTTGATGTTAAATCAGTAATGATTATTTCAGATGAATCATGGCAAGTAGATTGGGAGGAAAC
ATTGAGGGGAAGAGATGGAACTCTAAAAGGTAAACCATACATGATGAGAGCCATTGTTAATTTATATCAGAATCAACCAA
CAGATGATAATGCAGAAGTTGAAGTGTTACGTAATCCACACTTTATCTTTGTTCGTGATTTTAATTGGTCAAAACCACTT
TAA

Upstream 100 bases:

>100_bases
TTGCTGCGATCAAGGAGTTAGAAGCACGATACGGTGATGCTTGGGTACATGAATGGTTACGAATCAAAGGCATTAGCCTT
AATGATTATGGAGTTGCAGC

Downstream 100 bases:

>100_bases
CTAGGGGCTAAAAAATGAAAAAAACAATTATCTCTATATTAGCCCTTAGTGTTTTGGCTACACCCTCATATTCTGTTCTT
GCTGATGATTTAGCCGACCA

Product: conjugal transfer protein TrbF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MIFNLFKKKEKTLAAKVSQTDNPYLNARRTWNGHVSGVMSAIQIWQVVGILALLIALTAVGGIIKIGSQSKFVPLVFQQD
STGNTLSVTRADKIPDAKIEDYRTTAAKFIENIRLVTADSSLQRKAVLQTYSYLSAKDPSTIKANEYLNSSKEANPFNRA
TKELVSVDVKSVMIISDESWQVDWEETLRGRDGTLKGKPYMMRAIVNLYQNQPTDDNAEVEVLRNPHFIFVRDFNWSKPL

Sequences:

>Translated_240_residues
MIFNLFKKKEKTLAAKVSQTDNPYLNARRTWNGHVSGVMSAIQIWQVVGILALLIALTAVGGIIKIGSQSKFVPLVFQQD
STGNTLSVTRADKIPDAKIEDYRTTAAKFIENIRLVTADSSLQRKAVLQTYSYLSAKDPSTIKANEYLNSSKEANPFNRA
TKELVSVDVKSVMIISDESWQVDWEETLRGRDGTLKGKPYMMRAIVNLYQNQPTDDNAEVEVLRNPHFIFVRDFNWSKPL
>Mature_240_residues
MIFNLFKKKEKTLAAKVSQTDNPYLNARRTWNGHVSGVMSAIQIWQVVGILALLIALTAVGGIIKIGSQSKFVPLVFQQD
STGNTLSVTRADKIPDAKIEDYRTTAAKFIENIRLVTADSSLQRKAVLQTYSYLSAKDPSTIKANEYLNSSKEANPFNRA
TKELVSVDVKSVMIISDESWQVDWEETLRGRDGTLKGKPYMMRAIVNLYQNQPTDDNAEVEVLRNPHFIFVRDFNWSKPL

Specific function: Unknown

COG id: COG3701

COG function: function code U; Type IV secretory pathway, TrbF components

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007430 [H]

Pfam domain/function: PF04335 VirB8 [H]

EC number: NA

Molecular weight: Translated: 27045; Mature: 27045

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFNLFKKKEKTLAAKVSQTDNPYLNARRTWNGHVSGVMSAIQIWQVVGILALLIALTAV
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGIIKIGSQSKFVPLVFQQDSTGNTLSVTRADKIPDAKIEDYRTTAAKFIENIRLVTADS
CCEEEECCCCCEEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCEEEECCC
SLQRKAVLQTYSYLSAKDPSTIKANEYLNSSKEANPFNRATKELVSVDVKSVMIISDESW
HHHHHHHHHHHHHHCCCCCCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHEEEEEEECCCC
QVDWEETLRGRDGTLKGKPYMMRAIVNLYQNQPTDDNAEVEVLRNPHFIFVRDFNWSKPL
EECHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEEECCCCCCC
>Mature Secondary Structure
MIFNLFKKKEKTLAAKVSQTDNPYLNARRTWNGHVSGVMSAIQIWQVVGILALLIALTAV
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGIIKIGSQSKFVPLVFQQDSTGNTLSVTRADKIPDAKIEDYRTTAAKFIENIRLVTADS
CCEEEECCCCCEEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCEEEECCC
SLQRKAVLQTYSYLSAKDPSTIKANEYLNSSKEANPFNRATKELVSVDVKSVMIISDESW
HHHHHHHHHHHHHHCCCCCCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHEEEEEEECCCC
QVDWEETLRGRDGTLKGKPYMMRAIVNLYQNQPTDDNAEVEVLRNPHFIFVRDFNWSKPL
EECHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]