| Definition | Yersinia pseudotuberculosis IP 31758 plasmid_59kb, complete sequence. |
|---|---|
| Accession | NC_009704 |
| Length | 58,679 |
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The map label for this gene is trbE [H]
Identifier: 153930569
GI number: 153930569
Start: 7823
End: 10360
Strand: Direct
Name: trbE [H]
Synonym: YpsIP31758_A0050
Alternate gene names: 153930569
Gene position: 7823-10360 (Clockwise)
Preceding gene: 153930599
Following gene: 153930573
Centisome position: 13.33
GC content: 39.6
Gene sequence:
>2538_bases ATGATTGAATATATTCCTATAGCCTATGGAATATTAGGATTTTTATTGGTTCTAATCCTATTTTCCTTAATACGCGCTGC AAATAACGAGATCAGCTTAAAAAAATTTCGGTCAAAAGATGCTGGGGTATCCGATTTACTTAACTATGCAGCTGTTGTAG CAGATGGCGTAATCGTGGGTAAAAATGGCTCCTTTATGTCCGCATGGTTATATAAAGGTGATGATAATGCGAGTAGCACT GACGCCCAACGGGAGCTAATTTCATTTCGTATCAATCAAGCATTTGCCAAAATGGGTTCTGGCTGGATGGTACATATAGA TGCCGTTCGTCGCCCTGCGCCAAATTACAGTGAGACAGGAGCATCACACTTCAGAGATCCAATATCAGCGGCAGTTGATG AAGAACGTCGTCAATACTTTGAAAGTTTAGGGACGTTATATGAAGGCTTTTTTGTCTTAACCTTAACGTGGTTCCCTCCA TTACTGGCGCAAAGAAAAATAATAGAATTGATGTTTGATGATGATTCAGAAAAACACAGTAAAACATCACAAACTCATCA CTTAATCGAGCAATTCCAAACAGAAACAAAAAATTTCGCAGATCGCCTTTCTTCATCAATATCCCTAGTTCAATTATGTA GTGAAAAAGTAATCAATGAAGATGGCAGCGAAGTTACCCATGATAATCTACTGAGTTGGTTGCAATTCTGTTTAACCGGA ATTATTCAACCTATATTATTACCAAACAATCCAATGTATATAGATGCTCTAATTGGTGGCCAAGAGCTTTATGCGGGCGT TGTTCCGCGAATAGGCCGCAAATTTATTCAATGTGTGGCCATTGAAGGTTTCCCATTAAATTCTTATCCAGGAATATTAT CTTCATTGGCTGAGTTATCTATTGAATATCGCTGGTCAACACGATTTATATTTTTAGATAATTTTGAAGCGGTAAGTCAT TTAGAAAAATTCCGTAAAAAATGGAAGCAAAAAATTCATGGTTTCTTTGATCAGCTATTCAACACTGGTCGCGGAGATGT CAATGAAGATGCTTTAAGCATGGTTGGGGATGCCTCAGCAGCCATAGCAGAAACAAATAGTGGCATGGTTAATCAAGGAT ACTACACAAATAACATCATCTTAATGGGGGAAGATAGGGCGCTTGTAGAAGCTTCAGCACGTCGAGTTGAAAAAGAGATT CAGCGTCTAGGGTTTGCATCCAGAACCGAAACGATAAATACAATGGACGCATTCTTTGGGTCTTTACCTGGTCATGGTGT GGAAAATGTTAGGCGACCTCTCATGAACACCATGAACGTTGCTGATATGATTCCAACCAGCACTATTTGGACTGGTGAAA ACTACGCCCCTAGCCCTCTATATCAGCCAAATGCTCCAGCACTCATGAGTTGTGTTACAAACGGTAGCTCTCCTTTTAGG TTAAATCTACACGTTCGTGATTTAGGTCATGGTTTTATGTTTGGCCCAACGCGGTCAGGGAAATCAACCCATTTATCAAC TATTGCCATGCAGTTTCTAAGATATTTTGGCTCTCGCGTTTATAGTTTTGATAAAGGGATGTCAATGTATCCCACTTGTA AAGCTGTTGGGGGAAATCATTTCACTGTTGCTGCCAATGATGACAAATTATCTTTTGCTCCTTTATCAATATTAAAAACC AGGAGTGATAAAGCGTGGGCAATGGAATGGATAGATACGATTCTGGCTTTAAACGGAGTTATAACAACAGCTGCTCAGCG CAACGAAATTGCAAAAGCAATCGTCAATATGGCGGAGAGTAATTCTAAAACCATATCTGAGTTTTCATTATTAATTCAAG ATGAAGGTATAAGGAATGCACTGAAACAATATACAGTTGATGGCTTGATGGGTCATTTACTTGATGCTGAGGAAGATGGA TTAACCCTTGCTGACTTCATAACATTTGAAATTGAAGATTTAATGAACCTAGGCGAAAAATTTGCGCTTCCAGTTCTTCT TTATTTATTCAGACGTATAGAAACATCTTTAGATGGTCGACCAACATTAATCATTCTTGACGAAGCATGGTTAATGTTAG GCCATGAGGTATTCCGTGAAAAAATTCGTGAGTGGCTTAAAACCCTCGCAAAATTGAATTGCAGTGTATTAATGGCTACT CAAAACCTTTCTGACGCAAGTAATTCTGGAATATTAGACGTTATTGTCGAATCTACCGCCACGAAAATTTATCTTCCTAA TGTTAACGCCAGAGAAGAATCTGCGGCAGCTCTCTATACCCGAATGGGCCTTAACCCTCGCCAAATTGAGATCATCGCTT CAGCGGTACCAAAACAAGATTACTACTTCGTAAGTGAGAAGGGTCGCAGATTATACAACCTTGCATTAGGCCCGTTAGCA CTCGCATTCGTGGGAAGTACAGATAAAGAGTCCATTGCTGCGATCAAGGAGTTAGAAGCACGATACGGTGATGCTTGGGT ACATGAATGGTTACGAATCAAAGGCATTAGCCTTAATGATTATGGAGTTGCAGCATGA
Upstream 100 bases:
>100_bases ATGCGACAAATTTATATGCGCCAGCGCCTCTATAAAAAATATTATCCTGCAAGATCAACTCCGTTTCGAATCAATACAGA AGCGCAAGGAAAGCAATACA
Downstream 100 bases:
>100_bases TTTTCAATCTGTTCAAAAAGAAAGAAAAAACTTTAGCGGCTAAAGTTTCTCAAACCGATAACCCCTATTTGAATGCACGT CGTACGTGGAATGGTCATGT
Product: conjugal transfer protein TrbE
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 845; Mature: 845
Protein sequence:
>845_residues MIEYIPIAYGILGFLLVLILFSLIRAANNEISLKKFRSKDAGVSDLLNYAAVVADGVIVGKNGSFMSAWLYKGDDNASST DAQRELISFRINQAFAKMGSGWMVHIDAVRRPAPNYSETGASHFRDPISAAVDEERRQYFESLGTLYEGFFVLTLTWFPP LLAQRKIIELMFDDDSEKHSKTSQTHHLIEQFQTETKNFADRLSSSISLVQLCSEKVINEDGSEVTHDNLLSWLQFCLTG IIQPILLPNNPMYIDALIGGQELYAGVVPRIGRKFIQCVAIEGFPLNSYPGILSSLAELSIEYRWSTRFIFLDNFEAVSH LEKFRKKWKQKIHGFFDQLFNTGRGDVNEDALSMVGDASAAIAETNSGMVNQGYYTNNIILMGEDRALVEASARRVEKEI QRLGFASRTETINTMDAFFGSLPGHGVENVRRPLMNTMNVADMIPTSTIWTGENYAPSPLYQPNAPALMSCVTNGSSPFR LNLHVRDLGHGFMFGPTRSGKSTHLSTIAMQFLRYFGSRVYSFDKGMSMYPTCKAVGGNHFTVAANDDKLSFAPLSILKT RSDKAWAMEWIDTILALNGVITTAAQRNEIAKAIVNMAESNSKTISEFSLLIQDEGIRNALKQYTVDGLMGHLLDAEEDG LTLADFITFEIEDLMNLGEKFALPVLLYLFRRIETSLDGRPTLIILDEAWLMLGHEVFREKIREWLKTLAKLNCSVLMAT QNLSDASNSGILDVIVESTATKIYLPNVNAREESAAALYTRMGLNPRQIEIIASAVPKQDYYFVSEKGRRLYNLALGPLA LAFVGSTDKESIAAIKELEARYGDAWVHEWLRIKGISLNDYGVAA
Sequences:
>Translated_845_residues MIEYIPIAYGILGFLLVLILFSLIRAANNEISLKKFRSKDAGVSDLLNYAAVVADGVIVGKNGSFMSAWLYKGDDNASST DAQRELISFRINQAFAKMGSGWMVHIDAVRRPAPNYSETGASHFRDPISAAVDEERRQYFESLGTLYEGFFVLTLTWFPP LLAQRKIIELMFDDDSEKHSKTSQTHHLIEQFQTETKNFADRLSSSISLVQLCSEKVINEDGSEVTHDNLLSWLQFCLTG IIQPILLPNNPMYIDALIGGQELYAGVVPRIGRKFIQCVAIEGFPLNSYPGILSSLAELSIEYRWSTRFIFLDNFEAVSH LEKFRKKWKQKIHGFFDQLFNTGRGDVNEDALSMVGDASAAIAETNSGMVNQGYYTNNIILMGEDRALVEASARRVEKEI QRLGFASRTETINTMDAFFGSLPGHGVENVRRPLMNTMNVADMIPTSTIWTGENYAPSPLYQPNAPALMSCVTNGSSPFR LNLHVRDLGHGFMFGPTRSGKSTHLSTIAMQFLRYFGSRVYSFDKGMSMYPTCKAVGGNHFTVAANDDKLSFAPLSILKT RSDKAWAMEWIDTILALNGVITTAAQRNEIAKAIVNMAESNSKTISEFSLLIQDEGIRNALKQYTVDGLMGHLLDAEEDG LTLADFITFEIEDLMNLGEKFALPVLLYLFRRIETSLDGRPTLIILDEAWLMLGHEVFREKIREWLKTLAKLNCSVLMAT QNLSDASNSGILDVIVESTATKIYLPNVNAREESAAALYTRMGLNPRQIEIIASAVPKQDYYFVSEKGRRLYNLALGPLA LAFVGSTDKESIAAIKELEARYGDAWVHEWLRIKGISLNDYGVAA >Mature_845_residues MIEYIPIAYGILGFLLVLILFSLIRAANNEISLKKFRSKDAGVSDLLNYAAVVADGVIVGKNGSFMSAWLYKGDDNASST DAQRELISFRINQAFAKMGSGWMVHIDAVRRPAPNYSETGASHFRDPISAAVDEERRQYFESLGTLYEGFFVLTLTWFPP LLAQRKIIELMFDDDSEKHSKTSQTHHLIEQFQTETKNFADRLSSSISLVQLCSEKVINEDGSEVTHDNLLSWLQFCLTG IIQPILLPNNPMYIDALIGGQELYAGVVPRIGRKFIQCVAIEGFPLNSYPGILSSLAELSIEYRWSTRFIFLDNFEAVSH LEKFRKKWKQKIHGFFDQLFNTGRGDVNEDALSMVGDASAAIAETNSGMVNQGYYTNNIILMGEDRALVEASARRVEKEI QRLGFASRTETINTMDAFFGSLPGHGVENVRRPLMNTMNVADMIPTSTIWTGENYAPSPLYQPNAPALMSCVTNGSSPFR LNLHVRDLGHGFMFGPTRSGKSTHLSTIAMQFLRYFGSRVYSFDKGMSMYPTCKAVGGNHFTVAANDDKLSFAPLSILKT RSDKAWAMEWIDTILALNGVITTAAQRNEIAKAIVNMAESNSKTISEFSLLIQDEGIRNALKQYTVDGLMGHLLDAEEDG LTLADFITFEIEDLMNLGEKFALPVLLYLFRRIETSLDGRPTLIILDEAWLMLGHEVFREKIREWLKTLAKLNCSVLMAT QNLSDASNSGILDVIVESTATKIYLPNVNAREESAAALYTRMGLNPRQIEIIASAVPKQDYYFVSEKGRRLYNLALGPLA LAFVGSTDKESIAAIKELEARYGDAWVHEWLRIKGISLNDYGVAA
Specific function: Unknown
COG id: COG3451
COG function: function code U; Type IV secretory pathway, VirB4 components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the trbE/virB4 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR004346 - InterPro: IPR018145 [H]
Pfam domain/function: PF03135 CagE_TrbE_VirB [H]
EC number: NA
Molecular weight: Translated: 94284; Mature: 94284
Theoretical pI: Translated: 5.57; Mature: 5.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIEYIPIAYGILGFLLVLILFSLIRAANNEISLKKFRSKDAGVSDLLNYAAVVADGVIVG CCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCEEEC KNGSFMSAWLYKGDDNASSTDAQRELISFRINQAFAKMGSGWMVHIDAVRRPAPNYSETG CCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC ASHFRDPISAAVDEERRQYFESLGTLYEGFFVLTLTWFPPLLAQRKIIELMFDDDSEKHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH KTSQTHHLIEQFQTETKNFADRLSSSISLVQLCSEKVINEDGSEVTHDNLLSWLQFCLTG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH IIQPILLPNNPMYIDALIGGQELYAGVVPRIGRKFIQCVAIEGFPLNSYPGILSSLAELS HHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHCE IEYRWSTRFIFLDNFEAVSHLEKFRKKWKQKIHGFFDQLFNTGRGDVNEDALSMVGDASA EEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHH AIAETNSGMVNQGYYTNNIILMGEDRALVEASARRVEKEIQRLGFASRTETINTMDAFFG HHEECCCCCEECCEEECEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC SLPGHGVENVRRPLMNTMNVADMIPTSTIWTGENYAPSPLYQPNAPALMSCVTNGSSPFR CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCEE LNLHVRDLGHGFMFGPTRSGKSTHLSTIAMQFLRYFGSRVYSFDKGMSMYPTCKAVGGNH EEEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCE FTVAANDDKLSFAPLSILKTRSDKAWAMEWIDTILALNGVITTAAQRNEIAKAIVNMAES EEEEECCCCCEECHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC NSKTISEFSLLIQDEGIRNALKQYTVDGLMGHLLDAEEDGLTLADFITFEIEDLMNLGEK CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHCCHHH FALPVLLYLFRRIETSLDGRPTLIILDEAWLMLGHEVFREKIREWLKTLAKLNCSVLMAT HHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE QNLSDASNSGILDVIVESTATKIYLPNVNAREESAAALYTRMGLNPRQIEIIASAVPKQD CCCCCCCCCCEEEEEEECCCCEEEECCCCCCHHHHHHHHHHCCCCCHHEEHHHHHCCCCC YYFVSEKGRRLYNLALGPLALAFVGSTDKESIAAIKELEARYGDAWVHEWLRIKGISLND EEEEECCCCEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCC YGVAA CCCCC >Mature Secondary Structure MIEYIPIAYGILGFLLVLILFSLIRAANNEISLKKFRSKDAGVSDLLNYAAVVADGVIVG CCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCEEEC KNGSFMSAWLYKGDDNASSTDAQRELISFRINQAFAKMGSGWMVHIDAVRRPAPNYSETG CCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC ASHFRDPISAAVDEERRQYFESLGTLYEGFFVLTLTWFPPLLAQRKIIELMFDDDSEKHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH KTSQTHHLIEQFQTETKNFADRLSSSISLVQLCSEKVINEDGSEVTHDNLLSWLQFCLTG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH IIQPILLPNNPMYIDALIGGQELYAGVVPRIGRKFIQCVAIEGFPLNSYPGILSSLAELS HHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHCE IEYRWSTRFIFLDNFEAVSHLEKFRKKWKQKIHGFFDQLFNTGRGDVNEDALSMVGDASA EEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHH AIAETNSGMVNQGYYTNNIILMGEDRALVEASARRVEKEIQRLGFASRTETINTMDAFFG HHEECCCCCEECCEEECEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC SLPGHGVENVRRPLMNTMNVADMIPTSTIWTGENYAPSPLYQPNAPALMSCVTNGSSPFR CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCEE LNLHVRDLGHGFMFGPTRSGKSTHLSTIAMQFLRYFGSRVYSFDKGMSMYPTCKAVGGNH EEEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCE FTVAANDDKLSFAPLSILKTRSDKAWAMEWIDTILALNGVITTAAQRNEIAKAIVNMAES EEEEECCCCCEECHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC NSKTISEFSLLIQDEGIRNALKQYTVDGLMGHLLDAEEDGLTLADFITFEIEDLMNLGEK CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHCCHHH FALPVLLYLFRRIETSLDGRPTLIILDEAWLMLGHEVFREKIREWLKTLAKLNCSVLMAT HHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE QNLSDASNSGILDVIVESTATKIYLPNVNAREESAAALYTRMGLNPRQIEIIASAVPKQD CCCCCCCCCCEEEEEEECCCCEEEECCCCCCHHHHHHHHHHCCCCCHHEEHHHHHCCCCC YYFVSEKGRRLYNLALGPLALAFVGSTDKESIAAIKELEARYGDAWVHEWLRIKGISLND EEEEECCCCEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCC YGVAA CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8763954 [H]