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The map label for this gene is tetD [H]

Identifier: 153937720

GI number: 153937720

Start: 3692537

End: 3692923

Strand: Direct

Name: tetD [H]

Synonym: CLC_3554

Alternate gene names: 153937720

Gene position: 3692537-3692923 (Clockwise)

Preceding gene: 153937187

Following gene: 153935178

Centisome position: 98.19

GC content: 29.46

Gene sequence:

>387_bases
TTGTCTGTAAAAACTATAGAAAATATGGTTAACTGGATTGAAGATAATATAATGAGGAATCCAACACTAACTGAAATGTC
TAATTATGTTGGGTACTCCCCATTCTATTGTTCATCAAAGTTTCATGAAAATGTTGGAGTTACTTTTAAACAATATATAT
CAAAACGCAGATTAAGTCTTGCTGCGATAAAAGTAAAGGATACTAAAGTTAGATTTTTAGATATAGCATTAAAATATGGA
TTTTCATCTCAAGAAGCCTTTACGAGAGCTTTTGTAGCCACTTATGGGTGTACACCCAATCAATATAGAAAAAGATTAAC
TAATATTCAATTATATATGAAACCTAATGTATTTCCAGTACCCCAAAATGAAACTCTTAGTGATTAA

Upstream 100 bases:

>100_bases
TTTAAATAAATGAATATGTAGATTAGTGGGATTATCATTGCAAGTCACATCAAGTTTTTATTCGTAGAGAATGATATAAT
ACCTTATAGGGGTGATCTAA

Downstream 100 bases:

>100_bases
TAATATTATTCAATAATGGAAGGAAAGTGAAATGCTTAATAAATTAGGTAGAAATGATTTATGTTGGTGTGGTAGTCAAA
AAAAATATAAAAAATGCCAT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: ORFR [H]

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MSVKTIENMVNWIEDNIMRNPTLTEMSNYVGYSPFYCSSKFHENVGVTFKQYISKRRLSLAAIKVKDTKVRFLDIALKYG
FSSQEAFTRAFVATYGCTPNQYRKRLTNIQLYMKPNVFPVPQNETLSD

Sequences:

>Translated_128_residues
MSVKTIENMVNWIEDNIMRNPTLTEMSNYVGYSPFYCSSKFHENVGVTFKQYISKRRLSLAAIKVKDTKVRFLDIALKYG
FSSQEAFTRAFVATYGCTPNQYRKRLTNIQLYMKPNVFPVPQNETLSD
>Mature_127_residues
SVKTIENMVNWIEDNIMRNPTLTEMSNYVGYSPFYCSSKFHENVGVTFKQYISKRRLSLAAIKVKDTKVRFLDIALKYGF
SSQEAFTRAFVATYGCTPNQYRKRLTNIQLYMKPNVFPVPQNETLSD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081928, Length=106, Percent_Identity=34.9056603773585, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1790497, Length=103, Percent_Identity=33.9805825242718, Blast_Score=74, Evalue=3e-15,
Organism=Escherichia coli, GI1790857, Length=99, Percent_Identity=35.3535353535354, Blast_Score=71, Evalue=3e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 14886; Mature: 14755

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVKTIENMVNWIEDNIMRNPTLTEMSNYVGYSPFYCSSKFHENVGVTFKQYISKRRLSL
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEE
AAIKVKDTKVRFLDIALKYGFSSQEAFTRAFVATYGCTPNQYRKRLTNIQLYMKPNVFPV
EEEEECCCEEEEEEEHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCEEEEECCCEEEC
PQNETLSD
CCCCCCCC
>Mature Secondary Structure 
SVKTIENMVNWIEDNIMRNPTLTEMSNYVGYSPFYCSSKFHENVGVTFKQYISKRRLSL
CHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEE
AAIKVKDTKVRFLDIALKYGFSSQEAFTRAFVATYGCTPNQYRKRLTNIQLYMKPNVFPV
EEEEECCCEEEEEEEHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCEEEEECCCEEEC
PQNETLSD
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6094471; 6094472 [H]