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The map label for this gene is yicO [C]

Identifier: 153935871

GI number: 153935871

Start: 2958768

End: 2960270

Strand: Reverse

Name: yicO [C]

Synonym: CLC_2798

Alternate gene names: 153935871

Gene position: 2960270-2958768 (Counterclockwise)

Preceding gene: 153936649

Following gene: 153935289

Centisome position: 78.72

GC content: 31.54

Gene sequence:

>1503_bases
TTGGATTTACTCATATTTATAATCCGTAAACAAAAACTTTTTTATTTAGGAGGAGTATTACATGTATATGGAGAAGAAAA
AAACTATAAAGAACCTAATAATAAAGGTTTTTTGGACTCATTTTTTAAATTATCAGAACGTGGTAGTAATATTAAGACTG
AGATTATAGCAGGTATTACTACATTTATTACTATGGCATATATAATATTTGTTAATCCAAGCATATTAATGCAAGCAGGA
ATGAATTCTAAAGGGCTTGTTGGTGAAGCAGCTGTAAAGGCAGGGATATCTGCTATAAATGATCCAGTAGTTGGAGCAGT
ATTTGCAGCTACTTGTATTTCAGCAGGTATAGGTACTTTAATAATGGCTCTTTACGCTAATGTACCTTTCGCACAAGCTC
CAGGTATGGGGTTAAATGCCTTTTTTACTTTTAGTGTATGTTTAACTTTAGGATATACTTGGCAACAAGCTTTAGCAGCA
GTATTTATATCTGGATTGCTTTTTATAATTATAACATTAACATCTATAAGAGAAAAAATAGTAGATGCCCTTCCACAAAA
TTTAAAATTAGCTATATCTGGTGGAATAGGATTATTTATAGCTTTAGTAGGATTTAAATCTGGTGGAATAATAGTTGCAA
ATCCAGCAACACTTATAAGTTTTGGTGATTTTACAAATCCGGCAACTGTATTAACTATAATAGGTATTTGTATAACAGCT
ATTTTGATGGCTAAAAATGTTAAAGGTTCTATGTTAATAGGAATAGTTGTTACTACGCTAATAGGAATACCTTTAGGAGT
AACAAAAGTAGCAGGAGTAAGTTTTATATCAGCACCACCATCTTTAGCACCAACTTTTTTAAAATTAGATTTACCAGGAC
TTTTAGGTTTTGGAGGAGCAGGAATAGTTGGAGCTTTAATGAGCATATTGACAGTTGTTATATCTTTTAGCTTAGTAGAC
ATGTTTGATACTATAGGAACTTTAGTTGGAACAGCAGAAAAAGCAGGAATGCTTGATGAAAATGGAAAAATGGAAGATTT
AGATAAAGCACTCTTAGCAGATGCAGTAGCTACTACAGCAGGAGCTTTAATTGGAACAAGTACTGTTACTACTTATGTAG
AATCTACAGCAGGGGTATCAGAAGGTGGAAGAACAGGTTTAACATCCTTTGTTACAGCTATTATGTTTTTATTAGCAATG
TTTTTTAGTGGACTTGTAGGAATAGTTCCAGCAGAAGCTACAGCACCAGCACTTATAATAGTAGGTGTATTAATGATGGG
AGCTATAACAAAAATAGATTTTAATGATTTTACAGAAGCTCTACCAGCTTTCTTTACTATATCAATAATGCCATTTAGTT
ATAGTATTGCTAATGGTATAGCAGCAGGAATAATATTTTATCCAATAGTTAAAGTATTTACAGGTAAAAGAAAAGAAGTT
CATCCAATAGTTTATATATTGGCAGTATTATTCATAATTAGATTTACAATTCTTCCTAAATAA

Upstream 100 bases:

>100_bases
TATAATCTTAACAATACGGGTTAAGAGTTTCTACCAGAGACCGTAAATCTCTGACTATGGGTAAGTCCAGTTTATTTATT
TGTATATTAAAGTTTTTGTT

Downstream 100 bases:

>100_bases
ATATATATATATATAAATATAGCCTAAAGAACTATTAATAGTTCTTTAGGCTATATTTGAATTAAAGGAAGCTATATGTA
ATATTATTAAAGCAATATGG

Product: xanthine/uracil permease family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 500; Mature: 500

Protein sequence:

>500_residues
MDLLIFIIRKQKLFYLGGVLHVYGEEKNYKEPNNKGFLDSFFKLSERGSNIKTEIIAGITTFITMAYIIFVNPSILMQAG
MNSKGLVGEAAVKAGISAINDPVVGAVFAATCISAGIGTLIMALYANVPFAQAPGMGLNAFFTFSVCLTLGYTWQQALAA
VFISGLLFIIITLTSIREKIVDALPQNLKLAISGGIGLFIALVGFKSGGIIVANPATLISFGDFTNPATVLTIIGICITA
ILMAKNVKGSMLIGIVVTTLIGIPLGVTKVAGVSFISAPPSLAPTFLKLDLPGLLGFGGAGIVGALMSILTVVISFSLVD
MFDTIGTLVGTAEKAGMLDENGKMEDLDKALLADAVATTAGALIGTSTVTTYVESTAGVSEGGRTGLTSFVTAIMFLLAM
FFSGLVGIVPAEATAPALIIVGVLMMGAITKIDFNDFTEALPAFFTISIMPFSYSIANGIAAGIIFYPIVKVFTGKRKEV
HPIVYILAVLFIIRFTILPK

Sequences:

>Translated_500_residues
MDLLIFIIRKQKLFYLGGVLHVYGEEKNYKEPNNKGFLDSFFKLSERGSNIKTEIIAGITTFITMAYIIFVNPSILMQAG
MNSKGLVGEAAVKAGISAINDPVVGAVFAATCISAGIGTLIMALYANVPFAQAPGMGLNAFFTFSVCLTLGYTWQQALAA
VFISGLLFIIITLTSIREKIVDALPQNLKLAISGGIGLFIALVGFKSGGIIVANPATLISFGDFTNPATVLTIIGICITA
ILMAKNVKGSMLIGIVVTTLIGIPLGVTKVAGVSFISAPPSLAPTFLKLDLPGLLGFGGAGIVGALMSILTVVISFSLVD
MFDTIGTLVGTAEKAGMLDENGKMEDLDKALLADAVATTAGALIGTSTVTTYVESTAGVSEGGRTGLTSFVTAIMFLLAM
FFSGLVGIVPAEATAPALIIVGVLMMGAITKIDFNDFTEALPAFFTISIMPFSYSIANGIAAGIIFYPIVKVFTGKRKEV
HPIVYILAVLFIIRFTILPK
>Mature_500_residues
MDLLIFIIRKQKLFYLGGVLHVYGEEKNYKEPNNKGFLDSFFKLSERGSNIKTEIIAGITTFITMAYIIFVNPSILMQAG
MNSKGLVGEAAVKAGISAINDPVVGAVFAATCISAGIGTLIMALYANVPFAQAPGMGLNAFFTFSVCLTLGYTWQQALAA
VFISGLLFIIITLTSIREKIVDALPQNLKLAISGGIGLFIALVGFKSGGIIVANPATLISFGDFTNPATVLTIIGICITA
ILMAKNVKGSMLIGIVVTTLIGIPLGVTKVAGVSFISAPPSLAPTFLKLDLPGLLGFGGAGIVGALMSILTVVISFSLVD
MFDTIGTLVGTAEKAGMLDENGKMEDLDKALLADAVATTAGALIGTSTVTTYVESTAGVSEGGRTGLTSFVTAIMFLLAM
FFSGLVGIVPAEATAPALIIVGVLMMGAITKIDFNDFTEALPAFFTISIMPFSYSIANGIAAGIIFYPIVKVFTGKRKEV
HPIVYILAVLFIIRFTILPK

Specific function: Unknown

COG id: COG2252

COG function: function code R; Permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine/uracil permease family. AzgA purine transporter (TC 2.A.1.40) subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082309, Length=470, Percent_Identity=43.1914893617021, Blast_Score=372, Evalue=1e-104,
Organism=Escherichia coli, GI1790150, Length=470, Percent_Identity=42.7659574468085, Blast_Score=372, Evalue=1e-104,
Organism=Escherichia coli, GI1790499, Length=463, Percent_Identity=32.829373650108, Blast_Score=226, Evalue=2e-60,
Organism=Escherichia coli, GI48994909, Length=464, Percent_Identity=31.0344827586207, Blast_Score=211, Evalue=9e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006043 [H]

Pfam domain/function: PF00860 Xan_ur_permease [H]

EC number: NA

Molecular weight: Translated: 52370; Mature: 52370

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLLIFIIRKQKLFYLGGVLHVYGEEKNYKEPNNKGFLDSFFKLSERGSNIKTEIIAGIT
CCEEEEEEHHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH
TFITMAYIIFVNPSILMQAGMNSKGLVGEAAVKAGISAINDPVVGAVFAATCISAGIGTL
HHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
IMALYANVPFAQAPGMGLNAFFTFSVCLTLGYTWQQALAAVFISGLLFIIITLTSIREKI
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VDALPQNLKLAISGGIGLFIALVGFKSGGIIVANPATLISFGDFTNPATVLTIIGICITA
HHHCCCCCEEEEECCHHHHHHHHHCCCCCEEEECCHHEEEECCCCCHHHHHHHHHHHHHH
ILMAKNVKGSMLIGIVVTTLIGIPLGVTKVAGVSFISAPPSLAPTFLKLDLPGLLGFGGA
HHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHCCHHCCCCCCCCCCEEEEECCHHHCCCHH
GIVGALMSILTVVISFSLVDMFDTIGTLVGTAEKAGMLDENGKMEDLDKALLADAVATTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
GALIGTSTVTTYVESTAGVSEGGRTGLTSFVTAIMFLLAMFFSGLVGIVPAEATAPALII
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCCCCCCHHHHH
VGVLMMGAITKIDFNDFTEALPAFFTISIMPFSYSIANGIAAGIIFYPIVKVFTGKRKEV
HHHHHHHHHHCCCHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCH
HPIVYILAVLFIIRFTILPK
HHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDLLIFIIRKQKLFYLGGVLHVYGEEKNYKEPNNKGFLDSFFKLSERGSNIKTEIIAGIT
CCEEEEEEHHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH
TFITMAYIIFVNPSILMQAGMNSKGLVGEAAVKAGISAINDPVVGAVFAATCISAGIGTL
HHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
IMALYANVPFAQAPGMGLNAFFTFSVCLTLGYTWQQALAAVFISGLLFIIITLTSIREKI
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VDALPQNLKLAISGGIGLFIALVGFKSGGIIVANPATLISFGDFTNPATVLTIIGICITA
HHHCCCCCEEEEECCHHHHHHHHHCCCCCEEEECCHHEEEECCCCCHHHHHHHHHHHHHH
ILMAKNVKGSMLIGIVVTTLIGIPLGVTKVAGVSFISAPPSLAPTFLKLDLPGLLGFGGA
HHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHCCHHCCCCCCCCCCEEEEECCHHHCCCHH
GIVGALMSILTVVISFSLVDMFDTIGTLVGTAEKAGMLDENGKMEDLDKALLADAVATTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
GALIGTSTVTTYVESTAGVSEGGRTGLTSFVTAIMFLLAMFFSGLVGIVPAEATAPALII
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCCCCCCHHHHH
VGVLMMGAITKIDFNDFTEALPAFFTISIMPFSYSIANGIAAGIIFYPIVKVFTGKRKEV
HHHHHHHHHHCCCHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCH
HPIVYILAVLFIIRFTILPK
HHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]