Click here to switch to the map view.

The map label for this gene is yaaJ [C]

Identifier: 153936649

GI number: 153936649

Start: 2960798

End: 2962150

Strand: Reverse

Name: yaaJ [C]

Synonym: CLC_2799

Alternate gene names: 153936649

Gene position: 2962150-2960798 (Counterclockwise)

Preceding gene: 153937610

Following gene: 153935871

Centisome position: 78.77

GC content: 32.89

Gene sequence:

>1353_bases
ATGGATCTTTTAAATGCCGTGAAAGGCATAAACAATGTACTATGGAATTATGTATTGATTTTTTTGTTGTGTGGAGCAGG
TGTTGTGTTTACTGTATCTTTGAAATTTGTTCAAGTTTCTAAATTCAGAGAATCCTTTAAAAAAGCCTTTGGAGGAATGA
GTTTAAAGGGAAAAAAAGCAGGTAAAGATGGAATGAGTTCATTCCAATCATTAGCAACAGCAGTAGCTGCTCAAGTGGGT
ACAGGTAATTTAGCAGGAGCAGCAACAGCTATAGTATCAGGGGGACCTGGAGCAATCTTTTGGATGTGGATTAGTGCATT
TTTAGGAATGGCAACTATTTTTGGAGAAGCGGTTTTAGCACAGATTTTTAAAGAAAAAGTTAATGGAGAAGTGACAGGGG
GGCCAGCTTATTATATAAGTAAAGGACTGAAAAGTAAATTTTTAGCTAGTTTTTTTTCTGTAACTATAATATTAGCTCTG
GGATTTATAGGCAATATGGTTCAGGCAAATTCTATAGGAGCAGCCTTTTCAAATATTTCTAATATACCATCTTGGATAAT
AGGAATAATGATTGCAATACTTGGACTAGTTGTTTTTGTGGGAGGAATAGGAAGAATCGCTTCTGTAACAGAAAAAATGG
TTCCTATAATGGCGGCGTTTTATATTATAGGAAGTATTATAATATTAGCTAAGAATTATACAAATATATTACCTGCTTTT
AAATTAATATTTGTTTCTGCTTTTAATCCTAAGGCTGCTGTAGGTGGAGTTGCAGGTGTTACTGTAAAGCAAGCTATAAG
ATATGGTGTTGCAAGAGGATTATTCTCCAATGAAGCTGGAATGGGATCAACACCACATGCCCATGCAGTAGCTAAGGTAA
AACATCCAGTAGAACAAGGATTAGTAGCTATAGTTGGAGTATTTATAGATACTTTTATAGTTCTTACATTTACAGCATTT
GTAATACTTACAACAGGAGTACTAGATGGAAAAACAACCGGCATAGAATTGACACAAAATGCATTTACTCAGGGATTAGG
TAATTTCGGTGCATATTTTATAGCCGTTGCATTATTTTTCTTTGCTTTTTCAACAATAATTGGATGGTATTTCTTTGGAG
AAGCTAATGTAAAATATCTCTTTAAAGGCAAGGGATTAAATATATATAGATTATTAGTGGCAATTTTTATAGTTGTAGGA
ACAACTTTAAAAGTAGACCTAGTTTGGGAGCTTGCAGATACTTTTAATGGACTTATGGTAATTCCTAATGTAATAGCATT
GATAGCTTTATCTAAAATAGTAAAAGAGTCATTAAAGGATTATAATGAAAATTTTAAAGTTAAAGATATATAA

Upstream 100 bases:

>100_bases
GGAGGCCTTTTTATGTATTATTTTTATACATTAAAGGTCTTTTTTAGTTTTAGTTATTTCTTTTGTCCTCATTATTCAAT
TAGAAAAAGGAGGAATATGG

Downstream 100 bases:

>100_bases
TACTGTAATTGGATTTTTAAAATATAAATAATACAATGATAAAAGGGATACAATAGAATAAATAAAAGTTTAATTCAGAT
AGAGTTTTACTCTATCTGAA

Product: sodium:alanine symporter family protein

Products: Na (I) [Cytoplasm]; L-alanine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 450

Protein sequence:

>450_residues
MDLLNAVKGINNVLWNYVLIFLLCGAGVVFTVSLKFVQVSKFRESFKKAFGGMSLKGKKAGKDGMSSFQSLATAVAAQVG
TGNLAGAATAIVSGGPGAIFWMWISAFLGMATIFGEAVLAQIFKEKVNGEVTGGPAYYISKGLKSKFLASFFSVTIILAL
GFIGNMVQANSIGAAFSNISNIPSWIIGIMIAILGLVVFVGGIGRIASVTEKMVPIMAAFYIIGSIIILAKNYTNILPAF
KLIFVSAFNPKAAVGGVAGVTVKQAIRYGVARGLFSNEAGMGSTPHAHAVAKVKHPVEQGLVAIVGVFIDTFIVLTFTAF
VILTTGVLDGKTTGIELTQNAFTQGLGNFGAYFIAVALFFFAFSTIIGWYFFGEANVKYLFKGKGLNIYRLLVAIFIVVG
TTLKVDLVWELADTFNGLMVIPNVIALIALSKIVKESLKDYNENFKVKDI

Sequences:

>Translated_450_residues
MDLLNAVKGINNVLWNYVLIFLLCGAGVVFTVSLKFVQVSKFRESFKKAFGGMSLKGKKAGKDGMSSFQSLATAVAAQVG
TGNLAGAATAIVSGGPGAIFWMWISAFLGMATIFGEAVLAQIFKEKVNGEVTGGPAYYISKGLKSKFLASFFSVTIILAL
GFIGNMVQANSIGAAFSNISNIPSWIIGIMIAILGLVVFVGGIGRIASVTEKMVPIMAAFYIIGSIIILAKNYTNILPAF
KLIFVSAFNPKAAVGGVAGVTVKQAIRYGVARGLFSNEAGMGSTPHAHAVAKVKHPVEQGLVAIVGVFIDTFIVLTFTAF
VILTTGVLDGKTTGIELTQNAFTQGLGNFGAYFIAVALFFFAFSTIIGWYFFGEANVKYLFKGKGLNIYRLLVAIFIVVG
TTLKVDLVWELADTFNGLMVIPNVIALIALSKIVKESLKDYNENFKVKDI
>Mature_450_residues
MDLLNAVKGINNVLWNYVLIFLLCGAGVVFTVSLKFVQVSKFRESFKKAFGGMSLKGKKAGKDGMSSFQSLATAVAAQVG
TGNLAGAATAIVSGGPGAIFWMWISAFLGMATIFGEAVLAQIFKEKVNGEVTGGPAYYISKGLKSKFLASFFSVTIILAL
GFIGNMVQANSIGAAFSNISNIPSWIIGIMIAILGLVVFVGGIGRIASVTEKMVPIMAAFYIIGSIIILAKNYTNILPAF
KLIFVSAFNPKAAVGGVAGVTVKQAIRYGVARGLFSNEAGMGSTPHAHAVAKVKHPVEQGLVAIVGVFIDTFIVLTFTAF
VILTTGVLDGKTTGIELTQNAFTQGLGNFGAYFIAVALFFFAFSTIIGWYFFGEANVKYLFKGKGLNIYRLLVAIFIVVG
TTLKVDLVWELADTFNGLMVIPNVIALIALSKIVKESLKDYNENFKVKDI

Specific function: Unknown

COG id: COG1115

COG function: function code E; Na+/alanine symporter

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:alanine (SAF) symporter family [H]

Homologues:

Organism=Escherichia coli, GI1786188, Length=448, Percent_Identity=40.8482142857143, Blast_Score=299, Evalue=2e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001463 [H]

Pfam domain/function: PF01235 Na_Ala_symp [H]

EC number: NA

Molecular weight: Translated: 47862; Mature: 47862

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: PS00873 NA_ALANINE_SYMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHCCCCEECCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Na (I) [Periplasm]; L-alanine [Periplasm] [C]

Specific reaction: Na (I) [Periplasm] + L-alanine [Periplasm] = Na (I) [Cytoplasm] + L-alanine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]