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The map label for this gene is ydfL [H]

Identifier: 153934931

GI number: 153934931

Start: 2191239

End: 2192069

Strand: Reverse

Name: ydfL [H]

Synonym: CLC_2067

Alternate gene names: 153934931

Gene position: 2192069-2191239 (Counterclockwise)

Preceding gene: 153936239

Following gene: 153934764

Centisome position: 58.29

GC content: 26.59

Gene sequence:

>831_bases
ATGGAAGACGAATTATATTCAATAGGTAAAGTTGGTAAGATATGCAAAATAACAAAAAAAGCATTAAGATATTATGACAA
AATGGACATATTATCACCTGATAAAGTAGCTGATGAAAGTGGTTACAGATATTATAGCAAGAATACTTTATTATCTGTTC
CAGTAATAAAATATTATAAACAAAGTGGATTTAAGCTTGAAGAAATGAAAGTTTTTTTAGAAGGAAAGACCTATGATTTT
TTTCATACAAGTTTTAGAAATAAAATAGATGAATTAAAAGAACTTGAAAAAGAAATAAATTTAAAATTAAGATCCGTTAA
GGATTGGGATGATCTTATAGTTGAAGCCCAAATGGTAATTGAAAATAATGTTTCTGATGTAGCTATAAAATACATAGATA
ATCGTACTTTAACTTTTTTAGATCAAGATTTTGAATATGACTATATGGATTCTATAATTAACATAGAATTTACAAATTAC
ATAGATAGTATAGAAAATGCAATAACAGGGCCTGTAATCATACGTTTTCCATGCTTTCAAGATAAAATGAATGGAAAATG
CAATAAGATGACAATAATGCAGGAGACAATTTTAAAATGTAGGGAAGAATTGAGTGTGGAATTTGGTGGTTGGATGGTAG
CTGCTTGTTATCATATAGGACCTCATGAAACTATTAATGAAACATATAAAAAAATAAAGGATTGGACTCAAAAACACGGT
TATATATGTTCTGAAGAATCCTATGAAAGATATGTAACAGATTATTGGACAACTAAAAATAGAGATAGATTTGTAACAGA
AGTTTTAATAAAAATTAGTAGAGAAAAATAA

Upstream 100 bases:

>100_bases
CTCATTAATGGGTGGTATTTTGTTCAAATTTTCAGAAAAGTTGAACAATTAAATAGAATAAAATTTAATTTATAATATAA
AAAACATAAGGGGGATTAAT

Downstream 100 bases:

>100_bases
TTTAATTCTGGTGAAAACGTTGACCCTAGGGTAGACTATATAGGGTTAACGGTACTCCTTTTGTTAAAAAAAACACAATA
ATATTAAACAAAGCACAAGT

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MEDELYSIGKVGKICKITKKALRYYDKMDILSPDKVADESGYRYYSKNTLLSVPVIKYYKQSGFKLEEMKVFLEGKTYDF
FHTSFRNKIDELKELEKEINLKLRSVKDWDDLIVEAQMVIENNVSDVAIKYIDNRTLTFLDQDFEYDYMDSIINIEFTNY
IDSIENAITGPVIIRFPCFQDKMNGKCNKMTIMQETILKCREELSVEFGGWMVAACYHIGPHETINETYKKIKDWTQKHG
YICSEESYERYVTDYWTTKNRDRFVTEVLIKISREK

Sequences:

>Translated_276_residues
MEDELYSIGKVGKICKITKKALRYYDKMDILSPDKVADESGYRYYSKNTLLSVPVIKYYKQSGFKLEEMKVFLEGKTYDF
FHTSFRNKIDELKELEKEINLKLRSVKDWDDLIVEAQMVIENNVSDVAIKYIDNRTLTFLDQDFEYDYMDSIINIEFTNY
IDSIENAITGPVIIRFPCFQDKMNGKCNKMTIMQETILKCREELSVEFGGWMVAACYHIGPHETINETYKKIKDWTQKHG
YICSEESYERYVTDYWTTKNRDRFVTEVLIKISREK
>Mature_276_residues
MEDELYSIGKVGKICKITKKALRYYDKMDILSPDKVADESGYRYYSKNTLLSVPVIKYYKQSGFKLEEMKVFLEGKTYDF
FHTSFRNKIDELKELEKEINLKLRSVKDWDDLIVEAQMVIENNVSDVAIKYIDNRTLTFLDQDFEYDYMDSIINIEFTNY
IDSIENAITGPVIIRFPCFQDKMNGKCNKMTIMQETILKCREELSVEFGGWMVAACYHIGPHETINETYKKIKDWTQKHG
YICSEESYERYVTDYWTTKNRDRFVTEVLIKISREK

Specific function: Copper responsive transcription regulator [C]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 32768; Mature: 32768

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDELYSIGKVGKICKITKKALRYYDKMDILSPDKVADESGYRYYSKNTLLSVPVIKYYK
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCEEECHHHHHHH
QSGFKLEEMKVFLEGKTYDFFHTSFRNKIDELKELEKEINLKLRSVKDWDDLIVEAQMVI
HCCCCHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCEEEECCCCHHHHHHHHHHHH
ENNVSDVAIKYIDNRTLTFLDQDFEYDYMDSIINIEFTNYIDSIENAITGPVIIRFPCFQ
HCCCCCEEEEEECCCEEEEEECCCCHHHHHHEEEEEHHHHHHHHHHHCCCCEEEEECCCH
DKMNGKCNKMTIMQETILKCREELSVEFGGWMVAACYHIGPHETINETYKKIKDWTQKHG
HHHCCCCCHHHHHHHHHHHHHHHCCHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCC
YICSEESYERYVTDYWTTKNRDRFVTEVLIKISREK
EEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEDELYSIGKVGKICKITKKALRYYDKMDILSPDKVADESGYRYYSKNTLLSVPVIKYYK
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCEEECHHHHHHH
QSGFKLEEMKVFLEGKTYDFFHTSFRNKIDELKELEKEINLKLRSVKDWDDLIVEAQMVI
HCCCCHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCEEEECCCCHHHHHHHHHHHH
ENNVSDVAIKYIDNRTLTFLDQDFEYDYMDSIINIEFTNYIDSIENAITGPVIIRFPCFQ
HCCCCCEEEEEECCCEEEEEECCCCHHHHHHEEEEEHHHHHHHHHHHCCCCEEEEECCCH
DKMNGKCNKMTIMQETILKCREELSVEFGGWMVAACYHIGPHETINETYKKIKDWTQKHG
HHHCCCCCHHHHHHHHHHHHHHHCCHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCC
YICSEESYERYVTDYWTTKNRDRFVTEVLIKISREK
EEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]