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The map label for this gene is exbD [H]

Identifier: 153003046

GI number: 153003046

Start: 196202

End: 196615

Strand: Reverse

Name: exbD [H]

Synonym: Anae109_0169

Alternate gene names: 153003046

Gene position: 196615-196202 (Counterclockwise)

Preceding gene: 153003047

Following gene: 153003045

Centisome position: 3.73

GC content: 71.98

Gene sequence:

>414_bases
ATGGCCGGGCTCTCCGGCGGCGAGAACGACGACGACCTCATCAGCGGCATCAACGTCACGCCGCTCGTCGACGTCGTCCT
CGTGCTGCTCATCATCTTCATGGTGACCGCCACCTACATCGTCCGGGCGGCCATCGAGGTCGAGCTGCCGCGCGCGGCGC
ACGGCGGCGAGACCACCGGCACGGTCCTCACGGTCGTGCTCACCCGCGACGGGAAGGTCTACCTGGACGGCGTCGAGCGG
ACCGAGCAGGAGCTCGTCGCGCGGACGCGCGAGGCGGTGCGCAAGGACGCCGGCACCCGCGCCGTGATCTCCGCCGACAA
GGGTGCGCTGCACGGGGCGGTGGTGCGCGCCATCGACCTCGTGCGCGACGGCGGGGTGACCCGCTTCGCGATCCACGTCG
AGCGGGAGCGGTGA

Upstream 100 bases:

>100_bases
GTTCCAGCGCGGCCTCCGCCGGACGGCCCAGCGGGCGACGGCGCTCGGGCACGCGGCCATCGCGCACCTCGAGGCGCGCC
CCGGCAGGGAGGCGTGAGCG

Downstream 100 bases:

>100_bases
CGGATGGGGCGCCTCCCGCCGCCGCTCGCCTACGCCGTCTCCGCCGCGCTCCACCTCGCGGCGCTCGCCGGCCTCGCGCG
CCTGCCGCCCCTTCCGGCCC

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 136

Protein sequence:

>137_residues
MAGLSGGENDDDLISGINVTPLVDVVLVLLIIFMVTATYIVRAAIEVELPRAAHGGETTGTVLTVVLTRDGKVYLDGVER
TEQELVARTREAVRKDAGTRAVISADKGALHGAVVRAIDLVRDGGVTRFAIHVERER

Sequences:

>Translated_137_residues
MAGLSGGENDDDLISGINVTPLVDVVLVLLIIFMVTATYIVRAAIEVELPRAAHGGETTGTVLTVVLTRDGKVYLDGVER
TEQELVARTREAVRKDAGTRAVISADKGALHGAVVRAIDLVRDGGVTRFAIHVERER
>Mature_136_residues
AGLSGGENDDDLISGINVTPLVDVVLVLLIIFMVTATYIVRAAIEVELPRAAHGGETTGTVLTVVLTRDGKVYLDGVERT
EQELVARTREAVRKDAGTRAVISADKGALHGAVVRAIDLVRDGGVTRFAIHVERER

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 14631; Mature: 14500

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGLSGGENDDDLISGINVTPLVDVVLVLLIIFMVTATYIVRAAIEVELPRAAHGGETTG
CCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCC
TVLTVVLTRDGKVYLDGVERTEQELVARTREAVRKDAGTRAVISADKGALHGAVVRAIDL
EEEEEEEECCCEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH
VRDGGVTRFAIHVERER
HHCCCCEEEEEEEECCC
>Mature Secondary Structure 
AGLSGGENDDDLISGINVTPLVDVVLVLLIIFMVTATYIVRAAIEVELPRAAHGGETTG
CCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCC
TVLTVVLTRDGKVYLDGVERTEQELVARTREAVRKDAGTRAVISADKGALHGAVVRAIDL
EEEEEEEECCCEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH
VRDGGVTRFAIHVERER
HHCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]