Click here to switch to the map view.

The map label for this gene is tdk [H]

Identifier: 152977516

GI number: 152977516

Start: 3908730

End: 3909314

Strand: Reverse

Name: tdk [H]

Synonym: Bcer98_3851

Alternate gene names: 152977516

Gene position: 3909314-3908730 (Counterclockwise)

Preceding gene: 228904616

Following gene: 152977515

Centisome position: 95.65

GC content: 40.51

Gene sequence:

>585_bases
ATGTACTTAATAAATCAAAATGGTTGGATTGAAGTGATTTGCGGGAGTATGTTTTCTGGAAAATCAGAAGAGCTCATCCG
CCGTGTACGTCGTACGCAATTTGCGAAGCAGAATGCGATTGTTTTTAAACCTTGTATTGATAATCGTTATAGTGAAGAAG
ATGTTGTTTCACATAATGGCATGAAGGTGAAAGCAGTTCCTGTATCAGCTTCGAAAGATATATTTAAATATGTGACAGAA
GATATGAATGTGATTGCAATCGACGAGGTGCAATTTTTTGATGAGGACATTGTGGAAGTGGTGCAAATTTTGGCAAATCG
AGGCTATCGCGTGATTGTGGCCGGTTTAGACCAAGATTTCCGTGGTCTACCATTTGGACAAGTTCCTCAGCTAATGGCGA
TTGCTGAATATGTAACAAAATTACAAGCGGTTTGTTCCGTATGTGGTTCTCCAGCTAGTCGTACACAACGCTTAATTAAT
GATGAACCAGCTGCGTTTGATGACCCAATTATTTTAGTGGGTGCTTCAGAATCGTATGAACCGCGTTGCCGTCATTGTCA
TGCGGTGCCTACAAAGCAAAGATAA

Upstream 100 bases:

>100_bases
ATAAAACAGGCAAGTGTATCTATTCGCTTGTCTGTTTTTTTTGCGAAAATATAACCTTTACCCTACTTTACATAGGAAAA
GTAGCTGAAAGGAGAGCTCC

Downstream 100 bases:

>100_bases
ATGAAACTCGCTACATAAGGCGGGTTTTTTTCGGAAATTGGTAGCAAGAACAGTCGGTCGTTTAGGGGATATCTAGCTCT
CCGGCGGCAAGAATGGTCGG

Product: thymidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MYLINQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQNAIVFKPCIDNRYSEEDVVSHNGMKVKAVPVSASKDIFKYVTE
DMNVIAIDEVQFFDEDIVEVVQILANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEYVTKLQAVCSVCGSPASRTQRLIN
DEPAAFDDPIILVGASESYEPRCRHCHAVPTKQR

Sequences:

>Translated_194_residues
MYLINQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQNAIVFKPCIDNRYSEEDVVSHNGMKVKAVPVSASKDIFKYVTE
DMNVIAIDEVQFFDEDIVEVVQILANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEYVTKLQAVCSVCGSPASRTQRLIN
DEPAAFDDPIILVGASESYEPRCRHCHAVPTKQR
>Mature_194_residues
MYLINQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQNAIVFKPCIDNRYSEEDVVSHNGMKVKAVPVSASKDIFKYVTE
DMNVIAIDEVQFFDEDIVEVVQILANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEYVTKLQAVCSVCGSPASRTQRLIN
DEPAAFDDPIILVGASESYEPRCRHCHAVPTKQR

Specific function: Phosphorylates Both Thymidine And Deoxyuridine. [C]

COG id: COG1435

COG function: function code F; Thymidine kinase

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the thymidine kinase family [H]

Homologues:

Organism=Homo sapiens, GI164698438, Length=180, Percent_Identity=41.1111111111111, Blast_Score=120, Evalue=9e-28,
Organism=Caenorhabditis elegans, GI17543396, Length=196, Percent_Identity=34.1836734693878, Blast_Score=106, Evalue=9e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001267
- InterPro:   IPR020633
- InterPro:   IPR020634 [H]

Pfam domain/function: PF00265 TK [H]

EC number: =2.7.1.21 [H]

Molecular weight: Translated: 21831; Mature: 21831

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: PS00603 TK_CELLULAR_TYPE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLINQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQNAIVFKPCIDNRYSEEDVVSHNG
CEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHCCCC
MKVKAVPVSASKDIFKYVTEDMNVIAIDEVQFFDEDIVEVVQILANRGYRVIVAGLDQDF
EEEEEEECCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
RGLPFGQVPQLMAIAEYVTKLQAVCSVCGSPASRTQRLINDEPAAFDDPIILVGASESYE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCC
PRCRHCHAVPTKQR
CHHHHCCCCCCCCC
>Mature Secondary Structure
MYLINQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQNAIVFKPCIDNRYSEEDVVSHNG
CEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHCCCC
MKVKAVPVSASKDIFKYVTEDMNVIAIDEVQFFDEDIVEVVQILANRGYRVIVAGLDQDF
EEEEEEECCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
RGLPFGQVPQLMAIAEYVTKLQAVCSVCGSPASRTQRLINDEPAAFDDPIILVGASESYE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCC
PRCRHCHAVPTKQR
CHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA