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The map label for this gene is yqxC [H]

Identifier: 152976580

GI number: 152976580

Start: 2943220

End: 2944059

Strand: Reverse

Name: yqxC [H]

Synonym: Bcer98_2869

Alternate gene names: 152976580

Gene position: 2944059-2943220 (Counterclockwise)

Preceding gene: 152976581

Following gene: 152976579

Centisome position: 72.03

GC content: 38.69

Gene sequence:

>840_bases
ATGAGTGTAAAAAAAGAAAGAGTAGATGTATTAGTAGTAGAACGCGGGTTGATTGAAACACGTGAAAAAGCAAAGCGCGC
CATTATGGCTGGGCTTGTATATGCGAATGAGATGAGGCTCGATAAGCCGGGGGAAAAAATTCCTGAGGATACACCAATTA
CAATAAAGGGACAAGTTATGCCTTATGTAAGCCGCGGTGGTTATAAATTAGAAAAGGCATTACAAGTATTTCAACTTGAT
TTGCAAGATAAAATTATGATTGATATTGGTTCATCAACTGGTGGCTTTACAGATTGTGCACTACAAAATGGAGTAAAGTT
ATCTTACGCTCTGGATGTAGGATACAATCAATTAGCTTGGAAACTTCGCCAAGATGAACGTGTTGTTGTGATGGAGCGAA
CGAACTTCCGTTATGTTACACCAGCTGACTTAGAGCGTGGATTACCGCAGTTTGCAAGCATCGACGTTTCGTTCATATCA
TTAAAGCTTATTTTGCCGGTGTTAAAAACAATGCTTACGCCAAATGGTGATGTAGTTGCATTAATTAAACCGCAATTTGA
AGCTGGGCGAGAACAAGTTGGAAAAAAAGGTATCGTTCGTGACAAAAAAGTACATGAAGCTGTTGTCGAAATGATTGTCG
ACTTTGCGTTACAAGAAGGATACGATGTACAAGACTTGACATTCTCACCTATTACAGGTGGAGATGGAAATATTGAATTT
TTAATCCATTTAAAATGGTATGGTGAGCGTGAGACTGGTGAAAACCATTCTCCAATTTCCATCGAGCAAGTTGTTACAGA
AGCGCATGAAGTATTAAAACAAAAGGGAAAAGAGGAATAA

Upstream 100 bases:

>100_bases
TAGTGTGACGAAATTATTAGAAGAAATTGGGTTAACAACAGATGCGGTTGTAGATCGCATCCATACAATGATTCCATCAA
AACAAAAAAGGGCGTAACAA

Downstream 100 bases:

>100_bases
CGTATGTTGTTCCTCTTTTTGTTGGAATTGTATAATGATTGTAAAAACAATTGTGTACAATAAAACGATTATACGTTAAC
ATAAATAAGTGAAGTATATC

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MSVKKERVDVLVVERGLIETREKAKRAIMAGLVYANEMRLDKPGEKIPEDTPITIKGQVMPYVSRGGYKLEKALQVFQLD
LQDKIMIDIGSSTGGFTDCALQNGVKLSYALDVGYNQLAWKLRQDERVVVMERTNFRYVTPADLERGLPQFASIDVSFIS
LKLILPVLKTMLTPNGDVVALIKPQFEAGREQVGKKGIVRDKKVHEAVVEMIVDFALQEGYDVQDLTFSPITGGDGNIEF
LIHLKWYGERETGENHSPISIEQVVTEAHEVLKQKGKEE

Sequences:

>Translated_279_residues
MSVKKERVDVLVVERGLIETREKAKRAIMAGLVYANEMRLDKPGEKIPEDTPITIKGQVMPYVSRGGYKLEKALQVFQLD
LQDKIMIDIGSSTGGFTDCALQNGVKLSYALDVGYNQLAWKLRQDERVVVMERTNFRYVTPADLERGLPQFASIDVSFIS
LKLILPVLKTMLTPNGDVVALIKPQFEAGREQVGKKGIVRDKKVHEAVVEMIVDFALQEGYDVQDLTFSPITGGDGNIEF
LIHLKWYGERETGENHSPISIEQVVTEAHEVLKQKGKEE
>Mature_278_residues
SVKKERVDVLVVERGLIETREKAKRAIMAGLVYANEMRLDKPGEKIPEDTPITIKGQVMPYVSRGGYKLEKALQVFQLDL
QDKIMIDIGSSTGGFTDCALQNGVKLSYALDVGYNQLAWKLRQDERVVVMERTNFRYVTPADLERGLPQFASIDVSFISL
KLILPVLKTMLTPNGDVVALIKPQFEAGREQVGKKGIVRDKKVHEAVVEMIVDFALQEGYDVQDLTFSPITGGDGNIEFL
IHLKWYGERETGENHSPISIEQVVTEAHEVLKQKGKEE

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 31320; Mature: 31188

Theoretical pI: Translated: 5.50; Mature: 5.50

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVKKERVDVLVVERGLIETREKAKRAIMAGLVYANEMRLDKPGEKIPEDTPITIKGQVM
CCCCHHHHCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEE
PYVSRGGYKLEKALQVFQLDLQDKIMIDIGSSTGGFTDCALQNGVKLSYALDVGYNQLAW
EEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHCCCEEEEEEECCCHHHHE
KLRQDERVVVMERTNFRYVTPADLERGLPQFASIDVSFISLKLILPVLKTMLTPNGDVVA
EECCCCEEEEEEECCEEEECHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEE
LIKPQFEAGREQVGKKGIVRDKKVHEAVVEMIVDFALQEGYDVQDLTFSPITGGDGNIEF
EECCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEEE
LIHLKWYGERETGENHSPISIEQVVTEAHEVLKQKGKEE
EEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SVKKERVDVLVVERGLIETREKAKRAIMAGLVYANEMRLDKPGEKIPEDTPITIKGQVM
CCCHHHHCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEE
PYVSRGGYKLEKALQVFQLDLQDKIMIDIGSSTGGFTDCALQNGVKLSYALDVGYNQLAW
EEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHCCCEEEEEEECCCHHHHE
KLRQDERVVVMERTNFRYVTPADLERGLPQFASIDVSFISLKLILPVLKTMLTPNGDVVA
EECCCCEEEEEEECCEEEECHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEE
LIKPQFEAGREQVGKKGIVRDKKVHEAVVEMIVDFALQEGYDVQDLTFSPITGGDGNIEF
EECCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEEE
LIHLKWYGERETGENHSPISIEQVVTEAHEVLKQKGKEE
EEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]