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The map label for this gene is ydaM [C]

Identifier: 152976454

GI number: 152976454

Start: 2826780

End: 2828075

Strand: Reverse

Name: ydaM [C]

Synonym: Bcer98_2743

Alternate gene names: 152976454

Gene position: 2828075-2826780 (Counterclockwise)

Preceding gene: 152976458

Following gene: 152976453

Centisome position: 69.2

GC content: 34.03

Gene sequence:

>1296_bases
GTGATAAACATACTACATTTTTTATTAGAGAATACGGTTTTTCAAAATGTGTTGCAAGATCTGCGGTTGAATGTACTTTA
TATAGAAGAAGGCTGTAAACATCAACATGCAATAGAAAGTGTACATCCTAAATGTATGTTTATAGCTAGCAGTTTTGCAG
AAGGGGAGAGATTATTTGAGAGGGTTCAGCCACAAGTTGTCATCATATATGTATCAGATAGTATACAAGTCGAACATATA
AAACGGATATATGATTCGCAGATTGCTTTCATTGTAATTTGGGATCAGCCTGTGACAGCAAAATTTGTAGATATGTTGAA
AATAGGGATACGGAACATGGTTCTCCCCCCAGTAACGCCACAAGCTGTATTAGAAGAAGTGAATAGAGGGCTCTATCAAT
TATCTTTACTACAGCAACTAGGCTTACAACAAGAGCTGTTGCAAATGATGTTTGATTTTCAAAATGATTTGTTATTTATT
GTTGAAGATGATGAAATTATTGATTGTAATACGAATTTTTTGCACTTTTTTGGATATGAAAATTTGATGGCTTATCGTGA
AAATCATATCGTGTTTGCAGAACATTTTATTCAAGAACATGGTTATTATGCTACAAACCATGACATAACTTGGCTCGATG
ATTCTTTATTACAAGCTAGAAAAATCAAAATGTATAATGATAAGGGAGAGGCGTTTGTTTTTTTATTACGTGCAGCTGCT
TTACCAGAAGATGTATCTAGATTTATTGTAAAGTGTACAGATATTACAGAATTAGATGAGTTATATCAGGAACAAGAGCG
TCTTGCTACAATTGATACTTTGACAGAAATATATAATCGTTTAAAGTTTCAACAAATATTAGAAGAAGTGTGGAAAAGTG
CTCAGCGTAATCGTCAAAAAATAGCACTTATTTTCTTTGATATAGATGATTTTAAGAAGGTAAATGATACGTACGGGCAT
GATTTTGGTGACTTGGCCTTAATTCAGTTAGCTGAGCTGGTGAAAACAAAAATTGATTCCAAATATACGTTTGCGCGATG
GGGGGGAGAAGAATTTGTTATACTCGTAACCGATACAACGGAAAAAGAAGCGTTTCAAGTTGCTGAATCATTACGTTTTT
TTATTGAGACAAAACAATTCTCCAGTATTTCAAAGCTCACGGCGAGTTTTGGGGTTGCATTATACGAACAAGGGATAACG
AAAGAAGAACTCATACAGCGCGCGGATATTGCGTTATATGAGGCGAAACAAAATGGGAAAAATCAAGTTCGTATATATAG
AAAAGGAAAAATGTAA

Upstream 100 bases:

>100_bases
GGCTTAATTCATTCATCAAGTTGTTACTGTCCTAAAATAGCGAGATAAAAGAATCGTGAGGAATTCAGTAGAACAAGATA
TATGAAGTGAGTGAAGAACA

Downstream 100 bases:

>100_bases
TTTTTTCGCAACAAAGTGTTGCGATTTTTTTTTGTTGCTTGATAATAGATAGGAGAGGAATCGTTTATAATGGAATAACC
GTGGAGGTTTTGAAATGATA

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 431; Mature: 431

Protein sequence:

>431_residues
MINILHFLLENTVFQNVLQDLRLNVLYIEEGCKHQHAIESVHPKCMFIASSFAEGERLFERVQPQVVIIYVSDSIQVEHI
KRIYDSQIAFIVIWDQPVTAKFVDMLKIGIRNMVLPPVTPQAVLEEVNRGLYQLSLLQQLGLQQELLQMMFDFQNDLLFI
VEDDEIIDCNTNFLHFFGYENLMAYRENHIVFAEHFIQEHGYYATNHDITWLDDSLLQARKIKMYNDKGEAFVFLLRAAA
LPEDVSRFIVKCTDITELDELYQEQERLATIDTLTEIYNRLKFQQILEEVWKSAQRNRQKIALIFFDIDDFKKVNDTYGH
DFGDLALIQLAELVKTKIDSKYTFARWGGEEFVILVTDTTEKEAFQVAESLRFFIETKQFSSISKLTASFGVALYEQGIT
KEELIQRADIALYEAKQNGKNQVRIYRKGKM

Sequences:

>Translated_431_residues
MINILHFLLENTVFQNVLQDLRLNVLYIEEGCKHQHAIESVHPKCMFIASSFAEGERLFERVQPQVVIIYVSDSIQVEHI
KRIYDSQIAFIVIWDQPVTAKFVDMLKIGIRNMVLPPVTPQAVLEEVNRGLYQLSLLQQLGLQQELLQMMFDFQNDLLFI
VEDDEIIDCNTNFLHFFGYENLMAYRENHIVFAEHFIQEHGYYATNHDITWLDDSLLQARKIKMYNDKGEAFVFLLRAAA
LPEDVSRFIVKCTDITELDELYQEQERLATIDTLTEIYNRLKFQQILEEVWKSAQRNRQKIALIFFDIDDFKKVNDTYGH
DFGDLALIQLAELVKTKIDSKYTFARWGGEEFVILVTDTTEKEAFQVAESLRFFIETKQFSSISKLTASFGVALYEQGIT
KEELIQRADIALYEAKQNGKNQVRIYRKGKM
>Mature_431_residues
MINILHFLLENTVFQNVLQDLRLNVLYIEEGCKHQHAIESVHPKCMFIASSFAEGERLFERVQPQVVIIYVSDSIQVEHI
KRIYDSQIAFIVIWDQPVTAKFVDMLKIGIRNMVLPPVTPQAVLEEVNRGLYQLSLLQQLGLQQELLQMMFDFQNDLLFI
VEDDEIIDCNTNFLHFFGYENLMAYRENHIVFAEHFIQEHGYYATNHDITWLDDSLLQARKIKMYNDKGEAFVFLLRAAA
LPEDVSRFIVKCTDITELDELYQEQERLATIDTLTEIYNRLKFQQILEEVWKSAQRNRQKIALIFFDIDDFKKVNDTYGH
DFGDLALIQLAELVKTKIDSKYTFARWGGEEFVILVTDTTEKEAFQVAESLRFFIETKQFSSISKLTASFGVALYEQGIT
KEELIQRADIALYEAKQNGKNQVRIYRKGKM

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=278, Percent_Identity=30.2158273381295, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI145693134, Length=178, Percent_Identity=33.1460674157303, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1786584, Length=173, Percent_Identity=30.0578034682081, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1788381, Length=177, Percent_Identity=31.638418079096, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787541, Length=185, Percent_Identity=32.972972972973, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1787262, Length=189, Percent_Identity=33.3333333333333, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87082007, Length=158, Percent_Identity=34.1772151898734, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1787802, Length=185, Percent_Identity=29.1891891891892, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=32.3170731707317, Blast_Score=82, Evalue=9e-17,
Organism=Escherichia coli, GI1787056, Length=172, Percent_Identity=31.9767441860465, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87081974, Length=163, Percent_Identity=30.0613496932515, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788085, Length=171, Percent_Identity=29.8245614035088, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1788956, Length=155, Percent_Identity=30.3225806451613, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI87081977, Length=151, Percent_Identity=29.1390728476821, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 50395; Mature: 50395

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINILHFLLENTVFQNVLQDLRLNVLYIEEGCKHQHAIESVHPKCMFIASSFAEGERLFE
CHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHCCCHHEEEHHHHHHHHHHHH
RVQPQVVIIYVSDSIQVEHIKRIYDSQIAFIVIWDQPVTAKFVDMLKIGIRNMVLPPVTP
HCCCCEEEEEECCCCCHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCH
QAVLEEVNRGLYQLSLLQQLGLQQELLQMMFDFQNDLLFIVEDDEIIDCNTNFLHFFGYE
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEECCCEEECCCCEEEECCHH
NLMAYRENHIVFAEHFIQEHGYYATNHDITWLDDSLLQARKIKMYNDKGEAFVFLLRAAA
HHHHHHCCCEEHHHHHHHHCCCEEECCCCEECCHHHHHHHHHHEECCCCHHHHHHHHHHC
LPEDVSRFIVKCTDITELDELYQEQERLATIDTLTEIYNRLKFQQILEEVWKSAQRNRQK
CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
IALIFFDIDDFKKVNDTYGHDFGDLALIQLAELVKTKIDSKYTFARWGGEEFVILVTDTT
EEEEEEECHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEECCC
EKEAFQVAESLRFFIETKQFSSISKLTASFGVALYEQGITKEELIQRADIALYEAKQNGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEECCCCCC
NQVRIYRKGKM
CEEEEEECCCC
>Mature Secondary Structure
MINILHFLLENTVFQNVLQDLRLNVLYIEEGCKHQHAIESVHPKCMFIASSFAEGERLFE
CHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHCCCHHEEEHHHHHHHHHHHH
RVQPQVVIIYVSDSIQVEHIKRIYDSQIAFIVIWDQPVTAKFVDMLKIGIRNMVLPPVTP
HCCCCEEEEEECCCCCHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCH
QAVLEEVNRGLYQLSLLQQLGLQQELLQMMFDFQNDLLFIVEDDEIIDCNTNFLHFFGYE
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEECCCEEECCCCEEEECCHH
NLMAYRENHIVFAEHFIQEHGYYATNHDITWLDDSLLQARKIKMYNDKGEAFVFLLRAAA
HHHHHHCCCEEHHHHHHHHCCCEEECCCCEECCHHHHHHHHHHEECCCCHHHHHHHHHHC
LPEDVSRFIVKCTDITELDELYQEQERLATIDTLTEIYNRLKFQQILEEVWKSAQRNRQK
CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
IALIFFDIDDFKKVNDTYGHDFGDLALIQLAELVKTKIDSKYTFARWGGEEFVILVTDTT
EEEEEEECHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEECCC
EKEAFQVAESLRFFIETKQFSSISKLTASFGVALYEQGITKEELIQRADIALYEAKQNGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEECCCCCC
NQVRIYRKGKM
CEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]