Click here to switch to the map view.

The map label for this gene is ymfO [C]

Identifier: 152976307

GI number: 152976307

Start: 2695671

End: 2696981

Strand: Reverse

Name: ymfO [C]

Synonym: Bcer98_2595

Alternate gene names: 152976307

Gene position: 2696981-2695671 (Counterclockwise)

Preceding gene: 152976308

Following gene: 152976306

Centisome position: 65.99

GC content: 37.22

Gene sequence:

>1311_bases
GTGAAACTATTGGATTCAGTTCGAAAATTCTTCAGCTTTGAGAAAAGGCGAGTAGTTGAGTTAAATAAGGATGATGAAAA
ATTATTAGAGTGGTTAGGAATTTCACCGAGTGATGTAAATGTAAAAGGGAAAAACGCTCTCAAAGTTGCTACAGTCTTTG
CTTGTATCAAAATACTATCTGAATCTGTCTCTAAGCTTCCTCTTAAAATCTATCAAGAGGATGAAAGTGGGATTCAGAAG
GCGGCAAGACATTATCTTTACAACTTGCTCAAGTTGCGGCCGAATCCATATATGAGTTCAATGAATCTTTTCGGTGCACT
GGAAACTCAAAAGAATTTATACGGAAACAGCTACGCTAACATTGAATTTGATCGAAAAGGCAGAGTAAAAGCTTTATGGC
CAATCGATTCCTCAAAGGTGACTGTCTATATCGATGATGTTGGATTACTTAATTCGAAATCAAAAATGTGGTATGTCGTC
AATGTGAATGGCAAACAGATTAAGTTAATGCCAGATGAGATGTTGCATTTTAAAAACGGTCTTACTCTTGATGGGCTTGT
TGGCGTACCAACTATGGATTATTTAAAATCGACGGTTGAAAATTCAGCTTCAGCACAGAAATTTATAAACAATTTCTACA
AACAAGGATTACAGGTAAAAGGGTTAGTTCAATATGTTGGAGATTTAAATGAAGATGCAAAAAGAGTTTTTCGTGAAAAT
TTCGAGTCCATGTCTAGCGGATTGGAAAATAGCCATCGAATTGCGCTAATGCCAGTGGGATATCAGTTTCAACCCATATC
ATTAAGCATGTCAGATGCGCAGTTTCTTGAAAATACAGAGCTTACCATTAGGCAAATAGCCACTGCTTTTGGTATCAAAA
TGCATCAACTTAATGATTTAAGTAAAGCTACTCTTAATAACATTGAACAGCAGCAACGACAATTCTATACAGATACATTG
CAAGCTACTTTAACGATGTATGAGCAAGAGATGACTTATAAGCTATTTTTAGACAGTGAGTTGGATAAAGGCTTTTATTC
GAAATTCAATGTAGATGCTATTCTACGGGCGGATATTAAAACGAGATATGAAGCTTATAGGACAGGTATTCAAGGTGGTT
TCCTCAAACCTAACGAGGCCAGAAGTAAAGAAGATTTACCACCAGAAGCTGGTGGAGATCAATTACTCGTTAATGGGAAT
ATGATGCCGATTGAAATGGCTGGACAGGCTTATTTGAAAGGGGGTGGTAATAGTGGCGAAAACGGAAAAGAAGGAAACGA
AGGAGATTCGAGCGTTACCGATGACGATTGA

Upstream 100 bases:

>100_bases
TGCAAGGGCAATGTATGGGGCGAGTGTAAAAGTTGATGTGTCCGAATTCGCAAATAAAGACTTTCTTAATAAATTATGGA
ACTAGGGAGGGGGTGAGTGT

Downstream 100 bases:

>100_bases
AATTCGTGAGGCGAATGAAGAGGAAGGTAAGCGTACAATTTCCGGGGCCATTAAATACAACACTGAAAGTTCAGAAATGC
GAGATTGGTGGGGAGATACC

Product: HK97 family phage portal protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 436

Protein sequence:

>436_residues
MKLLDSVRKFFSFEKRRVVELNKDDEKLLEWLGISPSDVNVKGKNALKVATVFACIKILSESVSKLPLKIYQEDESGIQK
AARHYLYNLLKLRPNPYMSSMNLFGALETQKNLYGNSYANIEFDRKGRVKALWPIDSSKVTVYIDDVGLLNSKSKMWYVV
NVNGKQIKLMPDEMLHFKNGLTLDGLVGVPTMDYLKSTVENSASAQKFINNFYKQGLQVKGLVQYVGDLNEDAKRVFREN
FESMSSGLENSHRIALMPVGYQFQPISLSMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNIEQQQRQFYTDTL
QATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDQLLVNGN
MMPIEMAGQAYLKGGGNSGENGKEGNEGDSSVTDDD

Sequences:

>Translated_436_residues
MKLLDSVRKFFSFEKRRVVELNKDDEKLLEWLGISPSDVNVKGKNALKVATVFACIKILSESVSKLPLKIYQEDESGIQK
AARHYLYNLLKLRPNPYMSSMNLFGALETQKNLYGNSYANIEFDRKGRVKALWPIDSSKVTVYIDDVGLLNSKSKMWYVV
NVNGKQIKLMPDEMLHFKNGLTLDGLVGVPTMDYLKSTVENSASAQKFINNFYKQGLQVKGLVQYVGDLNEDAKRVFREN
FESMSSGLENSHRIALMPVGYQFQPISLSMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNIEQQQRQFYTDTL
QATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDQLLVNGN
MMPIEMAGQAYLKGGGNSGENGKEGNEGDSSVTDDD
>Mature_436_residues
MKLLDSVRKFFSFEKRRVVELNKDDEKLLEWLGISPSDVNVKGKNALKVATVFACIKILSESVSKLPLKIYQEDESGIQK
AARHYLYNLLKLRPNPYMSSMNLFGALETQKNLYGNSYANIEFDRKGRVKALWPIDSSKVTVYIDDVGLLNSKSKMWYVV
NVNGKQIKLMPDEMLHFKNGLTLDGLVGVPTMDYLKSTVENSASAQKFINNFYKQGLQVKGLVQYVGDLNEDAKRVFREN
FESMSSGLENSHRIALMPVGYQFQPISLSMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNIEQQQRQFYTDTL
QATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDQLLVNGN
MMPIEMAGQAYLKGGGNSGENGKEGNEGDSSVTDDD

Specific function: Unknown

COG id: COG4695

COG function: function code S; Phage-related protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage portal family. HK97 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006944
- InterPro:   IPR006427 [H]

Pfam domain/function: PF04860 Phage_portal [H]

EC number: NA

Molecular weight: Translated: 49233; Mature: 49233

Theoretical pI: Translated: 6.21; Mature: 6.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLLDSVRKFFSFEKRRVVELNKDDEKLLEWLGISPSDVNVKGKNALKVATVFACIKILS
CCHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHH
ESVSKLPLKIYQEDESGIQKAARHYLYNLLKLRPNPYMSSMNLFGALETQKNLYGNSYAN
HHHHHCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEEHHHHHHHCCCCEEE
IEFDRKGRVKALWPIDSSKVTVYIDDVGLLNSKSKMWYVVNVNGKQIKLMPDEMLHFKNG
EEECCCCCEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEECHHHHHHHHCC
LTLDGLVGVPTMDYLKSTVENSASAQKFINNFYKQGLQVKGLVQYVGDLNEDAKRVFREN
CCCCCEECCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHH
FESMSSGLENSHRIALMPVGYQFQPISLSMSDAQFLENTELTIRQIATAFGIKMHQLNDL
HHHHHCCCCCCCEEEEEECCCEEEEEEEECCHHHHHCCCCHHHHHHHHHHCCHHHHHHHH
SKATLNNIEQQQRQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHCCCCCEEHHHHH
TRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDQLLVNGNMMPIEMAGQAYLKGGGNSGE
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEECCCEEEECCCCCCC
NGKEGNEGDSSVTDDD
CCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKLLDSVRKFFSFEKRRVVELNKDDEKLLEWLGISPSDVNVKGKNALKVATVFACIKILS
CCHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHH
ESVSKLPLKIYQEDESGIQKAARHYLYNLLKLRPNPYMSSMNLFGALETQKNLYGNSYAN
HHHHHCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEEHHHHHHHCCCCEEE
IEFDRKGRVKALWPIDSSKVTVYIDDVGLLNSKSKMWYVVNVNGKQIKLMPDEMLHFKNG
EEECCCCCEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEECHHHHHHHHCC
LTLDGLVGVPTMDYLKSTVENSASAQKFINNFYKQGLQVKGLVQYVGDLNEDAKRVFREN
CCCCCEECCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHH
FESMSSGLENSHRIALMPVGYQFQPISLSMSDAQFLENTELTIRQIATAFGIKMHQLNDL
HHHHHCCCCCCCEEEEEECCCEEEEEEEECCHHHHHCCCCHHHHHHHHHHCCHHHHHHHH
SKATLNNIEQQQRQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHCCCCCEEHHHHH
TRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDQLLVNGNMMPIEMAGQAYLKGGGNSGE
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEECCCEEEECCCCCCC
NGKEGNEGDSSVTDDD
CCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA