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The map label for this gene is ylmE [H]

Identifier: 152976261

GI number: 152976261

Start: 2649672

End: 2650346

Strand: Reverse

Name: ylmE [H]

Synonym: Bcer98_2549

Alternate gene names: 152976261

Gene position: 2650346-2649672 (Counterclockwise)

Preceding gene: 152976262

Following gene: 152976260

Centisome position: 64.85

GC content: 37.19

Gene sequence:

>675_bases
GTGACAGTACAAGAGAATTTAGCAGTGATACAGGAAGAAATGAAACAAGCATGTGAGCGAGCTGGACGCTCCATCCATGA
TGTGAAACTTGTTGCAGTAACAAAAACGGTTGGAATTGAAAAAACGAATGAGGTAGTAGAGGCCGGAATTGCTGATTTAG
GGGAGAATAGAAATGAAGGATTTTTACAAAAATATGAGCATTTTGGCTCACAAGTCAATTGGCATTTTATCGGTTCCTTA
CAAACGAGAAAAGTAAAAGAAATTATTAGTCATATTGACTATTTGCATTCGTTAGATCGTCTTTCTCTTGCAAGAGAGAT
TCAAAAGCGTGCTACAAAGCCTGTTAAATGTTTTATACAAGTGAAAACATCGCGTGAAGAATCAAAACAAGGGTTACAAG
TTGAGGAACTTATTGAGTTTGTTCATGCTTTGAAGGAATTTGATAAAATTGAAGTTGTTGGTTTGATGACAATGGCACCA
TTTACGGAAGATGAAGCAGAAATACGCGGCTGCTTTAAAACGCTTCGCATGTTGCAACAGCAAGTACAGGAATTAAGACT
TTCGTATGCTCCATGCAAAGAGCTATCAATGGGAATGTCGAATGATTATACAATTGCGATTGAAGAAGGTGCTACATATA
TTCGTTTGGGAACGATTTTAGTAGGAAAAGCATAA

Upstream 100 bases:

>100_bases
TACAAGCTGTGAAGAACAATTATTTTTCTCGCATCGCCGCGACCAAGGAAAGACAGGAAGAATGTTGAGTTTCATAGGTT
TTAAGGAGGATTGAAAAACA

Downstream 100 bases:

>100_bases
AAGGAAGGAGAATGTATTATGAGTTGGTCAAAAGTGAAGTATTTCTTTTTTGACACGCCAGAGGAAAAAGAAGCAGCTCA
ATATGCTTACGAAAAGGAGC

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MTVQENLAVIQEEMKQACERAGRSIHDVKLVAVTKTVGIEKTNEVVEAGIADLGENRNEGFLQKYEHFGSQVNWHFIGSL
QTRKVKEIISHIDYLHSLDRLSLAREIQKRATKPVKCFIQVKTSREESKQGLQVEELIEFVHALKEFDKIEVVGLMTMAP
FTEDEAEIRGCFKTLRMLQQQVQELRLSYAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGKA

Sequences:

>Translated_224_residues
MTVQENLAVIQEEMKQACERAGRSIHDVKLVAVTKTVGIEKTNEVVEAGIADLGENRNEGFLQKYEHFGSQVNWHFIGSL
QTRKVKEIISHIDYLHSLDRLSLAREIQKRATKPVKCFIQVKTSREESKQGLQVEELIEFVHALKEFDKIEVVGLMTMAP
FTEDEAEIRGCFKTLRMLQQQVQELRLSYAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGKA
>Mature_223_residues
TVQENLAVIQEEMKQACERAGRSIHDVKLVAVTKTVGIEKTNEVVEAGIADLGENRNEGFLQKYEHFGSQVNWHFIGSLQ
TRKVKEIISHIDYLHSLDRLSLAREIQKRATKPVKCFIQVKTSREESKQGLQVEELIEFVHALKEFDKIEVVGLMTMAPF
TEDEAEIRGCFKTLRMLQQQVQELRLSYAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGKA

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=232, Percent_Identity=31.8965517241379, Blast_Score=98, Evalue=7e-21,
Organism=Escherichia coli, GI1789321, Length=228, Percent_Identity=33.3333333333333, Blast_Score=132, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI17533025, Length=239, Percent_Identity=30.9623430962343, Blast_Score=84, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6319435, Length=208, Percent_Identity=29.8076923076923, Blast_Score=89, Evalue=7e-19,
Organism=Drosophila melanogaster, GI45550861, Length=210, Percent_Identity=30.952380952381, Blast_Score=91, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25446; Mature: 25315

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVQENLAVIQEEMKQACERAGRSIHDVKLVAVTKTVGIEKTNEVVEAGIADLGENRNEG
CCCHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEEHHHCCCHHHHHHHHHHHHHCCCCCCH
FLQKYEHFGSQVNWHFIGSLQTRKVKEIISHIDYLHSLDRLSLAREIQKRATKPVKCFIQ
HHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
VKTSREESKQGLQVEELIEFVHALKEFDKIEVVGLMTMAPFTEDEAEIRGCFKTLRMLQQ
ECCCHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
QVQELRLSYAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGKA
HHHHHHHCCCCHHHHHCCCCCCEEEEEECCCCEEEEEEEEECCC
>Mature Secondary Structure 
TVQENLAVIQEEMKQACERAGRSIHDVKLVAVTKTVGIEKTNEVVEAGIADLGENRNEG
CCHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEEHHHCCCHHHHHHHHHHHHHCCCCCCH
FLQKYEHFGSQVNWHFIGSLQTRKVKEIISHIDYLHSLDRLSLAREIQKRATKPVKCFIQ
HHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
VKTSREESKQGLQVEELIEFVHALKEFDKIEVVGLMTMAPFTEDEAEIRGCFKTLRMLQQ
ECCCHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
QVQELRLSYAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGKA
HHHHHHHCCCCHHHHHCCCCCCEEEEEECCCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]