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The map label for this gene is rpoZ

Identifier: 152976236

GI number: 152976236

Start: 2622666

End: 2622878

Strand: Reverse

Name: rpoZ

Synonym: Bcer98_2522

Alternate gene names: 152976236

Gene position: 2622878-2622666 (Counterclockwise)

Preceding gene: 152976237

Following gene: 152976235

Centisome position: 64.18

GC content: 36.62

Gene sequence:

>213_bases
ATGTTAAATCCATCAATTGACTCATTACTAAAAAAAATCGACTCTAAGTATACATTAGTAACAGTAGCAGCGAAGCGCGC
TCGTGAAATGCAACTAGCGGACGATTGTGCTGTTGAAAAACCAGTTTCTCATAAATTTGTAGGGAAAGCATTAGAAGAAA
TTGATGCGGAATTATTAAACTACGTGCCAAGCGAAGAGAAAGTATCTGAGTAA

Upstream 100 bases:

>100_bases
GAATTAGCTTGTGAACGAATTAAAGCAATTGTGGTTGGCGAACATTGTCGCCGCGAAAGAGTAGCACAATATTATAAGGA
AATGACGGAGGGTATATAAT

Downstream 100 bases:

>100_bases
GACTTTCTTTTCGACAAATGAAAACATAGACTTTATAATTTTCTATGTAACGGTAACAACCTATTTACAAGTAGGTTGTT
ATTTTTTTACGATAGGAATT

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 70; Mature: 70

Protein sequence:

>70_residues
MLNPSIDSLLKKIDSKYTLVTVAAKRAREMQLADDCAVEKPVSHKFVGKALEEIDAELLNYVPSEEKVSE

Sequences:

>Translated_70_residues
MLNPSIDSLLKKIDSKYTLVTVAAKRAREMQLADDCAVEKPVSHKFVGKALEEIDAELLNYVPSEEKVSE
>Mature_70_residues
MLNPSIDSLLKKIDSKYTLVTVAAKRAREMQLADDCAVEKPVSHKFVGKALEEIDAELLNYVPSEEKVSE

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_BACCN (A7GRK0)

Other databases:

- EMBL:   CP000764
- RefSeq:   YP_001375753.1
- STRING:   A7GRK0
- EnsemblBacteria:   EBBACT00000036502
- GeneID:   5347073
- GenomeReviews:   CP000764_GR
- KEGG:   bcy:Bcer98_2522
- eggNOG:   COG1758
- GeneTree:   EBGT00050000002319
- HOGENOM:   HBG742204
- OMA:   SKYKLVT
- ProtClustDB:   PRK00392
- BioCyc:   BCER315749:BCER98_2522-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 7806; Mature: 7806

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNPSIDSLLKKIDSKYTLVTVAAKRAREMQLADDCAVEKPVSHKFVGKALEEIDAELLN
CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
YVPSEEKVSE
HCCCCCCCCC
>Mature Secondary Structure
MLNPSIDSLLKKIDSKYTLVTVAAKRAREMQLADDCAVEKPVSHKFVGKALEEIDAELLN
CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
YVPSEEKVSE
HCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA