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The map label for this gene is xerC [H]

Identifier: 152976197

GI number: 152976197

Start: 2580887

End: 2581786

Strand: Reverse

Name: xerC [H]

Synonym: Bcer98_2483

Alternate gene names: 152976197

Gene position: 2581786-2580887 (Counterclockwise)

Preceding gene: 152976198

Following gene: 152976196

Centisome position: 63.17

GC content: 35.78

Gene sequence:

>900_bases
GTGAATGTGAAGAAATTGTTACAATTATTCGTTGGATATTTACAAATTGAAAGAAATTATTCAAAATATACAATTGCAAG
TTATCAAAACGATTTAGAACATTTTGTGCAATTTATGGAACGAGAAGGTATATCCTCTTTTTTAGATGTTACATACGTCG
ATGTTCGGTTATATTTAACAACATTGCATGATGAAAAATTAGCCCGTAAATCTGTCGCAAGGAAAGTATCAAGCTTACGA
AGTTTATATCGTTTTTTGATGCGTGAAGGATACCGAGAAGATAATCCGTTTGCACTTGCGTCACTCCCAAAAAAAGAATG
GTCAATCCCAAAATTTTTATACGCTGAAGAGCTGGAGAAATTGTTTGAAGTTTCTGATACGAAGACCCCGCTAGGGCAAA
GAAATCAAGCGTTATTAGAACTTATGTATGCAACGGGAATTCGCGTGAGTGAATGTGTAACTTTAAAGCTTACAGATATT
GATTTCTCAGTGGGAACAATTTTGGTGATGGGAAAAGGGAAAAAACAAAGATATATTCCGTTCGGAAGTTATGCACAAGA
TGCTTTAATTACTTATATAGAAAACGGGAGAAAACAATTAGCTAAAAAAACAGAGGAATACTCTCAAATGGTGTTTTTAA
ATGCGAAGGGGGTCCCGTTAACAGATCGAGGTGTGCGCTATATTTTAAATGAGCTAATAAAGAAGACTTCTCTTACGATG
CGAATTAGTCCACATATGCTGCGGCATACATTTGCGACACATATGCTTGATGAAGGTTCAGATTTGCGCGCGGTACAAGA
ACTATTAGGTCATGAAAATTTATCAACGACACAAATTTATACGCATGTTTCGAAAGAAAGGTTACGTTCTGTTTACATGA
AGCATCACCCACGAGCATAA

Upstream 100 bases:

>100_bases
CTTTAGAAACAATTCAAAATTTTGTAAATATTTAGTTAAATTTCTTGCAAAGGCTACTGAGTTGTGATACGATTTAGTAG
CCTTTATTGGGGTGATTTAT

Downstream 100 bases:

>100_bases
ATTGCTTTTAAAGCGAGAAAAACATATAAAAGGAGTTTTTTCTATGGGAAATTTCCATGCTACAACGATATTTGCAATTC
ATCATAATGGAAAGTGTGCC

Product: site-specific tyrosine recombinase XerC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MNVKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYVDVRLYLTTLHDEKLARKSVARKVSSLR
SLYRFLMREGYREDNPFALASLPKKEWSIPKFLYAEELEKLFEVSDTKTPLGQRNQALLELMYATGIRVSECVTLKLTDI
DFSVGTILVMGKGKKQRYIPFGSYAQDALITYIENGRKQLAKKTEEYSQMVFLNAKGVPLTDRGVRYILNELIKKTSLTM
RISPHMLRHTFATHMLDEGSDLRAVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA

Sequences:

>Translated_299_residues
MNVKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYVDVRLYLTTLHDEKLARKSVARKVSSLR
SLYRFLMREGYREDNPFALASLPKKEWSIPKFLYAEELEKLFEVSDTKTPLGQRNQALLELMYATGIRVSECVTLKLTDI
DFSVGTILVMGKGKKQRYIPFGSYAQDALITYIENGRKQLAKKTEEYSQMVFLNAKGVPLTDRGVRYILNELIKKTSLTM
RISPHMLRHTFATHMLDEGSDLRAVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA
>Mature_299_residues
MNVKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYVDVRLYLTTLHDEKLARKSVARKVSSLR
SLYRFLMREGYREDNPFALASLPKKEWSIPKFLYAEELEKLFEVSDTKTPLGQRNQALLELMYATGIRVSECVTLKLTDI
DFSVGTILVMGKGKKQRYIPFGSYAQDALITYIENGRKQLAKKTEEYSQMVFLNAKGVPLTDRGVRYILNELIKKTSLTM
RISPHMLRHTFATHMLDEGSDLRAVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=291, Percent_Identity=37.8006872852234, Blast_Score=201, Evalue=5e-53,
Organism=Escherichia coli, GI1790244, Length=290, Percent_Identity=37.2413793103448, Blast_Score=192, Evalue=2e-50,
Organism=Escherichia coli, GI1790767, Length=185, Percent_Identity=29.1891891891892, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1790768, Length=190, Percent_Identity=22.6315789473684, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 34782; Mature: 34782

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYVDVRLYLT
CCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
TLHDEKLARKSVARKVSSLRSLYRFLMREGYREDNPFALASLPKKEWSIPKFLYAEELEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHH
LFEVSDTKTPLGQRNQALLELMYATGIRVSECVTLKLTDIDFSVGTILVMGKGKKQRYIP
HHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHEEEEEEEECCCCCCEEEEEECCCCCCCCC
FGSYAQDALITYIENGRKQLAKKTEEYSQMVFLNAKGVPLTDRGVRYILNELIKKTSLTM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHCCEE
RISPHMLRHTFATHMLDEGSDLRAVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA
EECHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNVKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYVDVRLYLT
CCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
TLHDEKLARKSVARKVSSLRSLYRFLMREGYREDNPFALASLPKKEWSIPKFLYAEELEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHH
LFEVSDTKTPLGQRNQALLELMYATGIRVSECVTLKLTDIDFSVGTILVMGKGKKQRYIP
HHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHEEEEEEEECCCCCCEEEEEECCCCCCCCC
FGSYAQDALITYIENGRKQLAKKTEEYSQMVFLNAKGVPLTDRGVRYILNELIKKTSLTM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHCCEE
RISPHMLRHTFATHMLDEGSDLRAVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA
EECHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA