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The map label for this gene is ypsC [H]

Identifier: 152975082

GI number: 152975082

Start: 1387701

End: 1388840

Strand: Direct

Name: ypsC [H]

Synonym: Bcer98_1282

Alternate gene names: 152975082

Gene position: 1387701-1388840 (Clockwise)

Preceding gene: 152975081

Following gene: 152975083

Centisome position: 33.95

GC content: 38.07

Gene sequence:

>1140_bases
ATGGGAAAAGTTACTTTAATTGCAACAGCAGCGATGGGAATTGAAGCTCTAGTTGCAAGAGAAGTTCGTGATCTTGGCTA
CGAGTGCCAAGTAGATAACGGAAAAGTAACGTTTGAAGCAGATGTAAATGCAATTTGTCGTGCCAATTTATGGTTGCGTA
CTGCTGATCGTGTCAAAATCAAAGTGGGGGAATTTAAAGCAACTACGTTTGATGAATTATTTGAGAAGACAAAGGCTCTA
AATTGGGGAGATTATATTCCTGAAAACGGGGAATTCCCTGTTATTGGTAAATCTGTGAAATCAACTTTATTTAGTGTTCC
AGATTGCCAACGTATCGTCAAAAAAGCTGTTGTTGAAAAGTTAAAATCAACATATAAGCGTACAACTTGGTTTGAAGAGA
ATGGTCCTTTATTCCGCATTGAGATTGCCATGTTAAAAGATATTGCAACGTTAACAATCGATACAAGTGGTGTCGGATTG
CACAAGCGCGGATATCGTGTTGATCAGGGAGAAGCACCGTTGAAAGAAACGTTAGCTGCATCCTTAATTAAACTTACAAA
TTGGAAACCAGATCGTCCATTCGTTGATCCGTTTTGTGGTTCTGGAACAATTCCGATTGAAGCGGCGCTGATTGGACAAA
ATATTGCACCAGGATTTAACCGAGACTTTGCATCGGATGAATGGGACTGGATTGGTAAGCAAAATTGGAAAGAAGCGCGT
CAAGAAGTAGAGGATTTAGCAAATTATGATCAGCCATTACAAATTATCGGATCAGATATTGATCATCGTATGATAAGAAT
CGCGCAAGATAATGCGGATGAAGTTGGATTAGGCGATTTAATTTCCTTTAAACAAATGCAAGTAAAAGATTTTACAACAA
AAGAGGAATATGGCTATGTTGTAACGAATCCTCCATACGGAGAACGTTTAAGTGAAAAAGCACTTGTTGAAAAGTTATAC
AAAGAAATGGGAGAAGTATTCCGTCCGTTAGACACTTGGTCCTTATATGTATTAACAAGCTATGAGGCATTTGAAAAATG
TTATGGACAAGAAGCGTCGAAAAAGCGTAAATTATTCAATGGCTTTATTCGTACAGATTACTACCAATACTTCGGAAAAC
GTCCACCTCGTAATTCATAG

Upstream 100 bases:

>100_bases
ATGATGCTTGAGTTACAATGGTAAAGAAAACAATACGTTATCATACTTAATCATTTATAGAGTGATGATTGTTTGATTAT
ACATAAGAGGTGAATAGAAA

Downstream 100 bases:

>100_bases
TATAAAGGCATTTGAAGGGCTAAAACATAATTGGTTCGCTTAGAACAAGTTATTAAATATTAGCCCAATAAATAAACCTC
ATTCTTTTTTCCGAAAGGAA

Product: putative RNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 378

Protein sequence:

>379_residues
MGKVTLIATAAMGIEALVAREVRDLGYECQVDNGKVTFEADVNAICRANLWLRTADRVKIKVGEFKATTFDELFEKTKAL
NWGDYIPENGEFPVIGKSVKSTLFSVPDCQRIVKKAVVEKLKSTYKRTTWFEENGPLFRIEIAMLKDIATLTIDTSGVGL
HKRGYRVDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEAALIGQNIAPGFNRDFASDEWDWIGKQNWKEAR
QEVEDLANYDQPLQIIGSDIDHRMIRIAQDNADEVGLGDLISFKQMQVKDFTTKEEYGYVVTNPPYGERLSEKALVEKLY
KEMGEVFRPLDTWSLYVLTSYEAFEKCYGQEASKKRKLFNGFIRTDYYQYFGKRPPRNS

Sequences:

>Translated_379_residues
MGKVTLIATAAMGIEALVAREVRDLGYECQVDNGKVTFEADVNAICRANLWLRTADRVKIKVGEFKATTFDELFEKTKAL
NWGDYIPENGEFPVIGKSVKSTLFSVPDCQRIVKKAVVEKLKSTYKRTTWFEENGPLFRIEIAMLKDIATLTIDTSGVGL
HKRGYRVDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEAALIGQNIAPGFNRDFASDEWDWIGKQNWKEAR
QEVEDLANYDQPLQIIGSDIDHRMIRIAQDNADEVGLGDLISFKQMQVKDFTTKEEYGYVVTNPPYGERLSEKALVEKLY
KEMGEVFRPLDTWSLYVLTSYEAFEKCYGQEASKKRKLFNGFIRTDYYQYFGKRPPRNS
>Mature_378_residues
GKVTLIATAAMGIEALVAREVRDLGYECQVDNGKVTFEADVNAICRANLWLRTADRVKIKVGEFKATTFDELFEKTKALN
WGDYIPENGEFPVIGKSVKSTLFSVPDCQRIVKKAVVEKLKSTYKRTTWFEENGPLFRIEIAMLKDIATLTIDTSGVGLH
KRGYRVDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEAALIGQNIAPGFNRDFASDEWDWIGKQNWKEARQ
EVEDLANYDQPLQIIGSDIDHRMIRIAQDNADEVGLGDLISFKQMQVKDFTTKEEYGYVVTNPPYGERLSEKALVEKLYK
EMGEVFRPLDTWSLYVLTSYEAFEKCYGQEASKKRKLFNGFIRTDYYQYFGKRPPRNS

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=368, Percent_Identity=32.8804347826087, Blast_Score=191, Evalue=9e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 43160; Mature: 43028

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE ; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKVTLIATAAMGIEALVAREVRDLGYECQVDNGKVTFEADVNAICRANLWLRTADRVKI
CCCEEEEEHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCCHHCCCEEEEECCEEEE
KVGEFKATTFDELFEKTKALNWGDYIPENGEFPVIGKSVKSTLFSVPDCQRIVKKAVVEK
EECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEECHHHHHHHHCCCHHHHHHHHHHHHH
LKSTYKRTTWFEENGPLFRIEIAMLKDIATLTIDTSGVGLHKRGYRVDQGEAPLKETLAA
HHHHHHHCCEECCCCCEEEEEHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH
SLIKLTNWKPDRPFVDPFCGSGTIPIEAALIGQNIAPGFNRDFASDEWDWIGKQNWKEAR
HHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHH
QEVEDLANYDQPLQIIGSDIDHRMIRIAQDNADEVGLGDLISFKQMQVKDFTTKEEYGYV
HHHHHHHCCCCCHHHHCCCHHHHEEEEECCCCCCCCCHHHHHHHHHHHHCCCCHHHCCEE
VTNPPYGERLSEKALVEKLYKEMGEVFRPLDTWSLYVLTSYEAFEKCYGQEASKKRKLFN
ECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHCCCHHHHHHHHH
GFIRTDYYQYFGKRPPRNS
HHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
GKVTLIATAAMGIEALVAREVRDLGYECQVDNGKVTFEADVNAICRANLWLRTADRVKI
CCEEEEEHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCCHHCCCEEEEECCEEEE
KVGEFKATTFDELFEKTKALNWGDYIPENGEFPVIGKSVKSTLFSVPDCQRIVKKAVVEK
EECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEECHHHHHHHHCCCHHHHHHHHHHHHH
LKSTYKRTTWFEENGPLFRIEIAMLKDIATLTIDTSGVGLHKRGYRVDQGEAPLKETLAA
HHHHHHHCCEECCCCCEEEEEHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH
SLIKLTNWKPDRPFVDPFCGSGTIPIEAALIGQNIAPGFNRDFASDEWDWIGKQNWKEAR
HHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHH
QEVEDLANYDQPLQIIGSDIDHRMIRIAQDNADEVGLGDLISFKQMQVKDFTTKEEYGYV
HHHHHHHCCCCCHHHHCCCHHHHEEEEECCCCCCCCCHHHHHHHHHHHHCCCCHHHCCEE
VTNPPYGERLSEKALVEKLYKEMGEVFRPLDTWSLYVLTSYEAFEKCYGQEASKKRKLFN
ECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHCCCHHHHHHHHH
GFIRTDYYQYFGKRPPRNS
HHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 2423526 [H]