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The map label for this gene is xerC [H]

Identifier: 152975083

GI number: 152975083

Start: 1388958

End: 1389872

Strand: Direct

Name: xerC [H]

Synonym: Bcer98_1283

Alternate gene names: 152975083

Gene position: 1388958-1389872 (Clockwise)

Preceding gene: 152975082

Following gene: 152975084

Centisome position: 33.98

GC content: 30.05

Gene sequence:

>915_bases
TTGTTGTATAAAATTGCAATGCAAGAATTTTTGGATGACAGGGAATTACGTAATTTAAGTAAACATACTTTGAAATCTTA
TAAAGGAATTTTGAAAAGGTTTGAGTCCTTTTGTGTAAATAAAGGGATATTTGACACTGATAAAGTTACGTCAAAAGTTG
CAAAAGAGTTTTTAATTTATTGTAAACATGAGTTGAAAAATAGTATATCTACAATAAATGAAAAGAATCGAACATTAAAG
GTGTATTTTAAGTACCTAGAAGAGGAAGGGATAGTTGAGGAGAATCCATTCAAAAAAATTAAATTTAGTAAAGAAGATAC
CATAACAGATGTTTTAACAGATGAGCAAGTGAAGAGTGTTCTTGAACACTTTGATAGAGGTCATTATAAAGGCACGAATT
TTGCTTTAATGAGAAACCGGATGGTAATTGTCTTGTTGATTTCTACAGGGCTTAGAAGAGAAGAATTAGTTAATTTAAAG
TGGTCTGATATTGACATGAGGAATAGGACAATTATGACCTATGGGAAGAAAAGAACCGTTGCTACTATTCCATACACAAG
GAAATTGCAAAAAGAATTAGCGGAATATAAAACATTTTTAGAATTTTATTTCGAAGAAGAGAAAGAAGTTGTATATGTGT
TCCCAGATAAGTGGAATCGACAATTAACTACAGAAGCAATATCTACTTTATTCAAACGTTTAAAAAAGAATTTAAATATG
GAAGGACTAACTTGTCATGCTTTTAGACGTTATTTTGCTTCTAAGTGTTTAAAAATGGGAATGGACTCTTTGAATTTACA
AAAACTCATGAGACATGAAACGCTCCAAATGACCGAGCGATATGTAAAACTTTATGGTCATGCACTGCATGATGTAAATG
ATAAATATAACCCTTTAAATTTTATTGAAGTTTAA

Upstream 100 bases:

>100_bases
GGCTAAAACATAATTGGTTCGCTTAGAACAAGTTATTAAATATTAGCCCAATAAATAAACCTCATTCTTTTTTCCGAAAG
GAAGAAAGGGTGAGGTTTTT

Downstream 100 bases:

>100_bases
ACCAAAAGAAAAAGAGTCGCTCCCGCCAAGAAACCGACTCTCAAAACTAGCACAGGGGAGAAAAACTCCACTGTTCCCAA
CTAAATAACGGACAAACCGT

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MLYKIAMQEFLDDRELRNLSKHTLKSYKGILKRFESFCVNKGIFDTDKVTSKVAKEFLIYCKHELKNSISTINEKNRTLK
VYFKYLEEEGIVEENPFKKIKFSKEDTITDVLTDEQVKSVLEHFDRGHYKGTNFALMRNRMVIVLLISTGLRREELVNLK
WSDIDMRNRTIMTYGKKRTVATIPYTRKLQKELAEYKTFLEFYFEEEKEVVYVFPDKWNRQLTTEAISTLFKRLKKNLNM
EGLTCHAFRRYFASKCLKMGMDSLNLQKLMRHETLQMTERYVKLYGHALHDVNDKYNPLNFIEV

Sequences:

>Translated_304_residues
MLYKIAMQEFLDDRELRNLSKHTLKSYKGILKRFESFCVNKGIFDTDKVTSKVAKEFLIYCKHELKNSISTINEKNRTLK
VYFKYLEEEGIVEENPFKKIKFSKEDTITDVLTDEQVKSVLEHFDRGHYKGTNFALMRNRMVIVLLISTGLRREELVNLK
WSDIDMRNRTIMTYGKKRTVATIPYTRKLQKELAEYKTFLEFYFEEEKEVVYVFPDKWNRQLTTEAISTLFKRLKKNLNM
EGLTCHAFRRYFASKCLKMGMDSLNLQKLMRHETLQMTERYVKLYGHALHDVNDKYNPLNFIEV
>Mature_304_residues
MLYKIAMQEFLDDRELRNLSKHTLKSYKGILKRFESFCVNKGIFDTDKVTSKVAKEFLIYCKHELKNSISTINEKNRTLK
VYFKYLEEEGIVEENPFKKIKFSKEDTITDVLTDEQVKSVLEHFDRGHYKGTNFALMRNRMVIVLLISTGLRREELVNLK
WSDIDMRNRTIMTYGKKRTVATIPYTRKLQKELAEYKTFLEFYFEEEKEVVYVFPDKWNRQLTTEAISTLFKRLKKNLNM
EGLTCHAFRRYFASKCLKMGMDSLNLQKLMRHETLQMTERYVKLYGHALHDVNDKYNPLNFIEV

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=311, Percent_Identity=24.1157556270096, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 36355; Mature: 36355

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYKIAMQEFLDDRELRNLSKHTLKSYKGILKRFESFCVNKGIFDTDKVTSKVAKEFLIY
CCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
CKHELKNSISTINEKNRTLKVYFKYLEEEGIVEENPFKKIKFSKEDTITDVLTDEQVKSV
HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHEECCCCHHHHHHHCHHHHHHH
LEHFDRGHYKGTNFALMRNRMVIVLLISTGLRREELVNLKWSDIDMRNRTIMTYGKKRTV
HHHHHCCCCCCCCHHHHHCCEEEEEEECCCCCHHHHHCCCCCCCCCCCCEEEEECCCCEE
ATIPYTRKLQKELAEYKTFLEFYFEEEKEVVYVFPDKWNRQLTTEAISTLFKRLKKNLNM
EECCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC
EGLTCHAFRRYFASKCLKMGMDSLNLQKLMRHETLQMTERYVKLYGHALHDVNDKYNPLN
CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
FIEV
EECC
>Mature Secondary Structure
MLYKIAMQEFLDDRELRNLSKHTLKSYKGILKRFESFCVNKGIFDTDKVTSKVAKEFLIY
CCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
CKHELKNSISTINEKNRTLKVYFKYLEEEGIVEENPFKKIKFSKEDTITDVLTDEQVKSV
HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHEECCCCHHHHHHHCHHHHHHH
LEHFDRGHYKGTNFALMRNRMVIVLLISTGLRREELVNLKWSDIDMRNRTIMTYGKKRTV
HHHHHCCCCCCCCHHHHHCCEEEEEEECCCCCHHHHHCCCCCCCCCCCCEEEEECCCCEE
ATIPYTRKLQKELAEYKTFLEFYFEEEKEVVYVFPDKWNRQLTTEAISTLFKRLKKNLNM
EECCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC
EGLTCHAFRRYFASKCLKMGMDSLNLQKLMRHETLQMTERYVKLYGHALHDVNDKYNPLN
CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
FIEV
EECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA