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The map label for this gene is rbsD

Identifier: 152974388

GI number: 152974388

Start: 641325

End: 641720

Strand: Direct

Name: rbsD

Synonym: Bcer98_0561

Alternate gene names: 152974388

Gene position: 641325-641720 (Clockwise)

Preceding gene: 152974387

Following gene: 152974389

Centisome position: 15.69

GC content: 35.86

Gene sequence:

>396_bases
ATGAAAAAGCATGGCGTATTAAATAGTGAAATTGCTGCTATATTAGCGGCACTTGGTCATACAGATACGATTGTAATCGC
GGACTGCGGATTACCAATTCCTGATAGCGTGAAGCGAATAGATTTAGCTGTAGAGCTTGGAAAGCCTTCTTTTCTGGATG
TATTACAAGTTGTAATAGAGGATATGGCTATTGAAAAAGTAACAGTAGCGGAAGAGATTACTACAAATAATAGAGAAATC
TATAAAGAAATTGAAACACGTTTAAAAGAAGCGAATTTTGAATATGTCTTGCATGAAGAGTTTAAAGAGAAAACAAAGCA
GGCAAAGGCGATTATTCGTACAGGGGAAGCAACACCTTATGCGAACATTATTTTACATGCAGGTGTGATTTTTTAA

Upstream 100 bases:

>100_bases
GTTTTGCAAATATAGCCGGTGGCCTTTCTGTAACAAAGCTCGGTGCACAAGGTGGTATGCCAACAAGAGAACAGGTGCGG
GAAGTACAGGGGATTGTTAA

Downstream 100 bases:

>100_bases
TAAAGGGATGTGATGAGAATGCGTATTGAAATGAAAAATATTTCAAAAGCGTTCAATGGGAACCCTGTTTTGAAGAATGC
CCAATTTCGTATCGAAACAG

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MKKHGVLNSEIAAILAALGHTDTIVIADCGLPIPDSVKRIDLAVELGKPSFLDVLQVVIEDMAIEKVTVAEEITTNNREI
YKEIETRLKEANFEYVLHEEFKEKTKQAKAIIRTGEATPYANIILHAGVIF

Sequences:

>Translated_131_residues
MKKHGVLNSEIAAILAALGHTDTIVIADCGLPIPDSVKRIDLAVELGKPSFLDVLQVVIEDMAIEKVTVAEEITTNNREI
YKEIETRLKEANFEYVLHEEFKEKTKQAKAIIRTGEATPYANIILHAGVIF
>Mature_131_residues
MKKHGVLNSEIAAILAALGHTDTIVIADCGLPIPDSVKRIDLAVELGKPSFLDVLQVVIEDMAIEKVTVAEEITTNNREI
YKEIETRLKEANFEYVLHEEFKEKTKQAKAIIRTGEATPYANIILHAGVIF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=46.7625899280576, Blast_Score=138, Evalue=1e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSD_BACCN (A7GLA2)

Other databases:

- EMBL:   CP000764
- RefSeq:   YP_001373905.1
- ProteinModelPortal:   A7GLA2
- SMR:   A7GLA2
- STRING:   A7GLA2
- EnsemblBacteria:   EBBACT00000039668
- GeneID:   5345166
- GenomeReviews:   CP000764_GR
- KEGG:   bcy:Bcer98_0561
- eggNOG:   COG1869
- GeneTree:   EBGT00050000001557
- HOGENOM:   HBG510403
- OMA:   RAVIRTG
- ProtClustDB:   PRK11797
- BioCyc:   BCER315749:BCER98_0561-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01661
- InterPro:   IPR023064
- InterPro:   IPR007721

Pfam domain/function: PF05025 RbsD_FucU; SSF102546 RbsD_FucU

EC number: NA

Molecular weight: Translated: 14542; Mature: 14542

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: ACT_SITE 20-20 BINDING 28-28 BINDING 98-98

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKHGVLNSEIAAILAALGHTDTIVIADCGLPIPDSVKRIDLAVELGKPSFLDVLQVVIE
CCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHEEEEEECCCCHHHHHHHHHHH
DMAIEKVTVAEEITTNNREIYKEIETRLKEANFEYVLHEEFKEKTKQAKAIIRTGEATPY
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCH
ANIILHAGVIF
HHHHHHCCCCC
>Mature Secondary Structure
MKKHGVLNSEIAAILAALGHTDTIVIADCGLPIPDSVKRIDLAVELGKPSFLDVLQVVIE
CCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHEEEEEECCCCHHHHHHHHHHH
DMAIEKVTVAEEITTNNREIYKEIETRLKEANFEYVLHEEFKEKTKQAKAIIRTGEATPY
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCH
ANIILHAGVIF
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA