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The map label for this gene is ygaF [H]

Identifier: 152974291

GI number: 152974291

Start: 513416

End: 513880

Strand: Direct

Name: ygaF [H]

Synonym: Bcer98_0458

Alternate gene names: 152974291

Gene position: 513416-513880 (Clockwise)

Preceding gene: 152974290

Following gene: 152974292

Centisome position: 12.56

GC content: 34.62

Gene sequence:

>465_bases
ATGATCACAGTAGGAGAAATGGCACCAGACTTTACTCTGGAAGCAAGCAATGGAGAACAAATTAAGTTATCTGATTTTAG
AGGAAAACATGTTGTTTTATATTTCTATCCAAAAGATATGACACCAGGGTGTACAACAGAAGCGTGTGATTTTCGAGATG
CATATGGAGTATTTCAAGAAAATGATACTGTCATTCTTGGAGTAAGCCCGGATCCAGCTAATAGACATGTGAAATTTATT
GAAAAACACGAATTACCATTTTTACTATTAGTGGATGAAGATCATAAGGTAGCAGAACAATATGGGGTTTGGAAATTAAA
GAAAAACTTTGGTAAAGAGTATATGGGAATTGAACGTTCGACTTTCCTTATTAATAAAAATGGTGAACTTGTACAAGAAT
GGCGTAAAGTGAGAGTAAAGGGACATGTCGAAGAAGTATTAGAAAGTATAAAAAAGCAGGCGTAA

Upstream 100 bases:

>100_bases
TTGGATATACATTACCCTTTGCATTTGTTGTTCGTACTGTAATAGAAAATGAAAAATAAGGAAATGTTTGTTATAGTAGA
AGGCAAAAGGAGTGATAAGT

Downstream 100 bases:

>100_bases
ATATATCTTTTCTATACGAGAAACGTATAGTGGGATAGCATTTTCTGTTAGCAATTGTATTTCCTGCTGTTTACCTTGTT
TCTATTTAGCATCTAGGAGG

Product: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen

Products: NA

Alternate protein names: Bacterioferritin comigratory protein; Thioredoxin reductase [H]

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MITVGEMAPDFTLEASNGEQIKLSDFRGKHVVLYFYPKDMTPGCTTEACDFRDAYGVFQENDTVILGVSPDPANRHVKFI
EKHELPFLLLVDEDHKVAEQYGVWKLKKNFGKEYMGIERSTFLINKNGELVQEWRKVRVKGHVEEVLESIKKQA

Sequences:

>Translated_154_residues
MITVGEMAPDFTLEASNGEQIKLSDFRGKHVVLYFYPKDMTPGCTTEACDFRDAYGVFQENDTVILGVSPDPANRHVKFI
EKHELPFLLLVDEDHKVAEQYGVWKLKKNFGKEYMGIERSTFLINKNGELVQEWRKVRVKGHVEEVLESIKKQA
>Mature_154_residues
MITVGEMAPDFTLEASNGEQIKLSDFRGKHVVLYFYPKDMTPGCTTEACDFRDAYGVFQENDTVILGVSPDPANRHVKFI
EKHELPFLLLVDEDHKVAEQYGVWKLKKNFGKEYMGIERSTFLINKNGELVQEWRKVRVKGHVEEVLESIKKQA

Specific function: Unknown

COG id: COG1225

COG function: function code O; Peroxiredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI32189392, Length=139, Percent_Identity=35.9712230215827, Blast_Score=69, Evalue=2e-12,
Organism=Escherichia coli, GI1788825, Length=153, Percent_Identity=42.483660130719, Blast_Score=136, Evalue=5e-34,
Organism=Caenorhabditis elegans, GI193204376, Length=139, Percent_Identity=35.9712230215827, Blast_Score=73, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI32565831, Length=139, Percent_Identity=35.9712230215827, Blast_Score=73, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6322180, Length=93, Percent_Identity=34.4086021505376, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI17738015, Length=161, Percent_Identity=34.1614906832298, Blast_Score=70, Evalue=6e-13,

Paralogues:

None

Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000866
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00578 AhpC-TSA [H]

EC number: =1.11.1.15 [H]

Molecular weight: Translated: 17722; Mature: 17722

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITVGEMAPDFTLEASNGEQIKLSDFRGKHVVLYFYPKDMTPGCTTEACDFRDAYGVFQE
CEECCCCCCCEEEECCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCHHHCCEEEC
NDTVILGVSPDPANRHVKFIEKHELPFLLLVDEDHKVAEQYGVWKLKKNFGKEYMGIERS
CCEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCHHHHHHCEEEEHHHCCHHHCCCCCE
TFLINKNGELVQEWRKVRVKGHVEEVLESIKKQA
EEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHCC
>Mature Secondary Structure
MITVGEMAPDFTLEASNGEQIKLSDFRGKHVVLYFYPKDMTPGCTTEACDFRDAYGVFQE
CEECCCCCCCEEEECCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCHHHCCEEEC
NDTVILGVSPDPANRHVKFIEKHELPFLLLVDEDHKVAEQYGVWKLKKNFGKEYMGIERS
CCEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCHHHHHHCEEEEHHHCCHHHCCCCCE
TFLINKNGELVQEWRKVRVKGHVEEVLESIKKQA
EEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]