| Definition | Bacillus cereus subsp. cytotoxis NVH 391-98, complete genome. |
|---|---|
| Accession | NC_009674 |
| Length | 4,087,024 |
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The map label for this gene is pflB [H]
Identifier: 152974264
GI number: 152974264
Start: 486574
End: 488823
Strand: Direct
Name: pflB [H]
Synonym: Bcer98_0431
Alternate gene names: 152974264
Gene position: 486574-488823 (Clockwise)
Preceding gene: 152974263
Following gene: 152974265
Centisome position: 11.91
GC content: 36.84
Gene sequence:
>2250_bases ATGACTCAAGTATTAGAGACTGTAAAAAATGCATGGGAAAAATTTAAAGGTGAAAAATGGAAAGTTGAGATTGATGTTCG CGATTTCATTCTAAATAATGTAAACGTTTACAACGGGGACGAATCCTTCTTAGCAGGAGCAACAGAAGCAACGAAAAAAC TTTGGGATCAAGTAATGGATCTAACTAAACAAGAACGTGAAAATGGTGGCGTTCTTGATATGGACACAAAAATTGTTTCT TCTATTACATCACATGGTCCAGGGTATTTAAATAAGGAGCTTGAAAAAGTAGTAGGTGTTCAAACAGATCAGCCATTTAA ACGTTCTTTACAACCATTTGGTGGTATTCGTATGGCAGAGCAATCTTGTGAAGCATATGGATTTAAAGTGGATGAGGAAT TAAGTCGTATCTTTAGAGATTGGCGCAAAACTCATAACCAAGGTGTATTTGATGCTTACACTCCAGAAATGAGAGCAGCT CGTAAATCAGGTGTTATTACTGGTCTTCCAGACGCATATGGACGCGGACGTATTATTGGTGATTATCGCCGCGTAGCACT ATATGGGGTAGATCGTTTAATTGAAGCGAAAGAAGAGGATTTAAACCTAACAGGAAGTGTAATGAGTGAAGAGGTTATCC GTTTACGTGAAGAAGTATCTGAACAAATTCGTGCACTTCAAGAATTAAAAGAAATGGCAGCTTCTCACGGTTTTGATATT TCAAAACCAGCGACAAATGCACGAGAAGCATTCCAATGGTTATACTTTGCTTATCTTGCAGCAATTAAAGAACAAAACGG GGCTGCAATGAGTCTTGGACGTACTTCAACATTCTTAGATATTTATGTTGAAAGAGATTTAGAAAATGGCACTTTAACTG AAGAGGAAGCCCAAGAGATTGTTGACCATTTCATTATGAAGTTACGTCTTGTAAAATTTGCAAGAACTCCTGATTATAAT GAATTATTCTCTGGTGATCCAACTTGGGTAACTGAATCTATCGGTGGTATTGCACTTGACGGTCGTCCATTAGTAACAAA AAACTCATTCCGTTTCTTGCATACATTGGACAATTTAGGACCTGCGCCAGAGCCAAACTTAACAGTTCTTTGGTCTAAGC AATTACCACAGAAATTTAAAAACTACTGTGCAAAAATGTCTATTAAAACATCTGCAATCCAATATGAAAATGACGACATT ATGCGTCCAGAATATGGCGATGACTATGGTATTGCTTGCTGTGTATCCGCAATGAAAATTGGTAAACAAATGCAATTCTT CGGAGCTCGTGCAAACTTAGCGAAGGCTTTATTATACGCTATTAATGGTGGGAAAGACGAAAAATCAAAAGTGCAAGTAG GGCCAGAATTTGCACCAATTACTTCCGACGTACTAGATTATGATGAAGTTATGCATAAATTTGATATGACAATGGAATGG TTAGCGGGTCTTTACTTAAATACATTAAATGTAATTCATTACATGCACGACAAATATAGCTATGAACGTATCGAAATGGC ACTTCATGATACAGAAGTTCTTCGCACAATGGCAACAGGGATCGCTGGTCTATCTGTCGTAGCTGACTCTTTAAGTGCAA TTAAATATGCAAAAGTAAAACCAATTCGCGATGAAAATGGTATCGCGGTTGACTTTGAAATTGAAGGTGACTTCCCGAAA TATGGTAACAATGATGACCGCGTTGATGAAATTGCAGTAAATCTTGTGAAAACATTTATGAACAAACTTCGTAAACATAA AACATACCGTAATTCTGTTCATACAATGTCAATCTTAACAATTACATCTAATGTGGTATATGGTAAGAAAACTGGTAATA CTCCAGATGGACGCCGTGCTGGAGAACCATTCGCACCAGGGGCAAATCCAATGCATGGACGTGATACAAAAGGTGCACTA GCATCGCTATTATCTGTTGCGAAATTACCATACGAAGATGCGCAAGATGGTATTTCTAATACATTCTCCATCATTCCGAA AGCGCTTGGTAAAGAAGAAGAGGTACAAGTTAGTAACTTAGTATCTATGTTAGATGGATATGCAGTAAAAGAAGGACATC ACTTAAATATTAACGTATTTAATCGTGAAACATTATTGGATGCAATGGAACATCCTGAAAAATATCCACAATTAACAATT CGTGTATCTGGTTATGCTGTTAACTTTATTAAATTAACTCGTGAACAACAAATTGATGTAATTAATCGTACAATGCATGA AAGCATGTAA
Upstream 100 bases:
>100_bases ACTATCTCGTTCGTTTTTTAAAAAAAGTAGTATTCTAAATGTGTAAGCTGTTATATAAAAAATCTTAGTCCTGTACTAAT CAAAAATGGAGGAGATTAGG
Downstream 100 bases:
>100_bases AGAAAAATTTCCCCCTATCTCTTAATAAGGGCACGGGGGAAATTGTTTCAATAAAGGAGGAAGTAACATGGTAAAAGGAA GAATTCATTCTGTAGAGTCT
Product: formate acetyltransferase
Products: NA
Alternate protein names: Pyruvate formate-lyase [H]
Number of amino acids: Translated: 749; Mature: 748
Protein sequence:
>749_residues MTQVLETVKNAWEKFKGEKWKVEIDVRDFILNNVNVYNGDESFLAGATEATKKLWDQVMDLTKQERENGGVLDMDTKIVS SITSHGPGYLNKELEKVVGVQTDQPFKRSLQPFGGIRMAEQSCEAYGFKVDEELSRIFRDWRKTHNQGVFDAYTPEMRAA RKSGVITGLPDAYGRGRIIGDYRRVALYGVDRLIEAKEEDLNLTGSVMSEEVIRLREEVSEQIRALQELKEMAASHGFDI SKPATNAREAFQWLYFAYLAAIKEQNGAAMSLGRTSTFLDIYVERDLENGTLTEEEAQEIVDHFIMKLRLVKFARTPDYN ELFSGDPTWVTESIGGIALDGRPLVTKNSFRFLHTLDNLGPAPEPNLTVLWSKQLPQKFKNYCAKMSIKTSAIQYENDDI MRPEYGDDYGIACCVSAMKIGKQMQFFGARANLAKALLYAINGGKDEKSKVQVGPEFAPITSDVLDYDEVMHKFDMTMEW LAGLYLNTLNVIHYMHDKYSYERIEMALHDTEVLRTMATGIAGLSVVADSLSAIKYAKVKPIRDENGIAVDFEIEGDFPK YGNNDDRVDEIAVNLVKTFMNKLRKHKTYRNSVHTMSILTITSNVVYGKKTGNTPDGRRAGEPFAPGANPMHGRDTKGAL ASLLSVAKLPYEDAQDGISNTFSIIPKALGKEEEVQVSNLVSMLDGYAVKEGHHLNINVFNRETLLDAMEHPEKYPQLTI RVSGYAVNFIKLTREQQIDVINRTMHESM
Sequences:
>Translated_749_residues MTQVLETVKNAWEKFKGEKWKVEIDVRDFILNNVNVYNGDESFLAGATEATKKLWDQVMDLTKQERENGGVLDMDTKIVS SITSHGPGYLNKELEKVVGVQTDQPFKRSLQPFGGIRMAEQSCEAYGFKVDEELSRIFRDWRKTHNQGVFDAYTPEMRAA RKSGVITGLPDAYGRGRIIGDYRRVALYGVDRLIEAKEEDLNLTGSVMSEEVIRLREEVSEQIRALQELKEMAASHGFDI SKPATNAREAFQWLYFAYLAAIKEQNGAAMSLGRTSTFLDIYVERDLENGTLTEEEAQEIVDHFIMKLRLVKFARTPDYN ELFSGDPTWVTESIGGIALDGRPLVTKNSFRFLHTLDNLGPAPEPNLTVLWSKQLPQKFKNYCAKMSIKTSAIQYENDDI MRPEYGDDYGIACCVSAMKIGKQMQFFGARANLAKALLYAINGGKDEKSKVQVGPEFAPITSDVLDYDEVMHKFDMTMEW LAGLYLNTLNVIHYMHDKYSYERIEMALHDTEVLRTMATGIAGLSVVADSLSAIKYAKVKPIRDENGIAVDFEIEGDFPK YGNNDDRVDEIAVNLVKTFMNKLRKHKTYRNSVHTMSILTITSNVVYGKKTGNTPDGRRAGEPFAPGANPMHGRDTKGAL ASLLSVAKLPYEDAQDGISNTFSIIPKALGKEEEVQVSNLVSMLDGYAVKEGHHLNINVFNRETLLDAMEHPEKYPQLTI RVSGYAVNFIKLTREQQIDVINRTMHESM >Mature_748_residues TQVLETVKNAWEKFKGEKWKVEIDVRDFILNNVNVYNGDESFLAGATEATKKLWDQVMDLTKQERENGGVLDMDTKIVSS ITSHGPGYLNKELEKVVGVQTDQPFKRSLQPFGGIRMAEQSCEAYGFKVDEELSRIFRDWRKTHNQGVFDAYTPEMRAAR KSGVITGLPDAYGRGRIIGDYRRVALYGVDRLIEAKEEDLNLTGSVMSEEVIRLREEVSEQIRALQELKEMAASHGFDIS KPATNAREAFQWLYFAYLAAIKEQNGAAMSLGRTSTFLDIYVERDLENGTLTEEEAQEIVDHFIMKLRLVKFARTPDYNE LFSGDPTWVTESIGGIALDGRPLVTKNSFRFLHTLDNLGPAPEPNLTVLWSKQLPQKFKNYCAKMSIKTSAIQYENDDIM RPEYGDDYGIACCVSAMKIGKQMQFFGARANLAKALLYAINGGKDEKSKVQVGPEFAPITSDVLDYDEVMHKFDMTMEWL AGLYLNTLNVIHYMHDKYSYERIEMALHDTEVLRTMATGIAGLSVVADSLSAIKYAKVKPIRDENGIAVDFEIEGDFPKY GNNDDRVDEIAVNLVKTFMNKLRKHKTYRNSVHTMSILTITSNVVYGKKTGNTPDGRRAGEPFAPGANPMHGRDTKGALA SLLSVAKLPYEDAQDGISNTFSIIPKALGKEEEVQVSNLVSMLDGYAVKEGHHLNINVFNRETLLDAMEHPEKYPQLTIR VSGYAVNFIKLTREQQIDVINRTMHESM
Specific function: Glucose metabolism (nonoxidative conversion). [C]
COG id: COG1882
COG function: function code C; Pyruvate-formate lyase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 pyruvate formate lyase domain [H]
Homologues:
Organism=Escherichia coli, GI1787131, Length=760, Percent_Identity=65.6578947368421, Blast_Score=1060, Evalue=0.0, Organism=Escherichia coli, GI48994926, Length=751, Percent_Identity=65.3794940079894, Blast_Score=1030, Evalue=0.0, Organism=Escherichia coli, GI1787044, Length=707, Percent_Identity=27.1570014144272, Blast_Score=201, Evalue=2e-52, Organism=Escherichia coli, GI1790388, Length=687, Percent_Identity=24.3085880640466, Blast_Score=158, Evalue=1e-39, Organism=Escherichia coli, GI1788933, Length=61, Percent_Identity=70.4918032786885, Blast_Score=89, Evalue=7e-19,
Paralogues:
None
Copy number: 3,500 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005949 - InterPro: IPR001150 - InterPro: IPR019777 - InterPro: IPR004184 [H]
Pfam domain/function: PF01228 Gly_radical; PF02901 PFL [H]
EC number: =2.3.1.54 [H]
Molecular weight: Translated: 84459; Mature: 84328
Theoretical pI: Translated: 5.60; Mature: 5.60
Prosite motif: PS00850 GLY_RADICAL_1 ; PS51149 GLY_RADICAL_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQVLETVKNAWEKFKGEKWKVEIDVRDFILNNVNVYNGDESFLAGATEATKKLWDQVMD CCHHHHHHHHHHHHHCCCEEEEEEEHHHHHHCCCEEECCCHHHHCCCHHHHHHHHHHHHH LTKQERENGGVLDMDTKIVSSITSHGPGYLNKELEKVVGVQTDQPFKRSLQPFGGIRMAE HHHHHHHCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHH QSCEAYGFKVDEELSRIFRDWRKTHNQGVFDAYTPEMRAARKSGVITGLPDAYGRGRIIG HHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCEECCCCCCCCCCEEH DYRRVALYGVDRLIEAKEEDLNLTGSVMSEEVIRLREEVSEQIRALQELKEMAASHGFDI HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC SKPATNAREAFQWLYFAYLAAIKEQNGAAMSLGRTSTFLDIYVERDLENGTLTEEEAQEI CCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEEEEECCCCCCCCHHHHHHH VDHFIMKLRLVKFARTPDYNELFSGDPTWVTESIGGIALDGRPLVTKNSFRFLHTLDNLG HHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHCCCCEEECCCCEEECCCHHHHHHHHHCC PAPEPNLTVLWSKQLPQKFKNYCAKMSIKTSAIQYENDDIMRPEYGDDYGIACCVSAMKI CCCCCCEEEEECHHHHHHHHHHHHHCCEEHHEEEECCCCCCCCCCCCCCHHHHHHHHHHH GKQMQFFGARANLAKALLYAINGGKDEKSKVQVGPEFAPITSDVLDYDEVMHKFDMTMEW HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHH LAGLYLNTLNVIHYMHDKYSYERIEMALHDTEVLRTMATGIAGLSVVADSLSAIKYAKVK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PIRDENGIAVDFEIEGDFPKYGNNDDRVDEIAVNLVKTFMNKLRKHKTYRNSVHTMSILT CCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEEE ITSNVVYGKKTGNTPDGRRAGEPFAPGANPMHGRDTKGALASLLSVAKLPYEDAQDGISN EECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH TFSIIPKALGKEEEVQVSNLVSMLDGYAVKEGHHLNINVFNRETLLDAMEHPEKYPQLTI HHHHHHHHHCCCHHHHHHHHHHHHCCCEECCCCEEEEEEECHHHHHHHHHCCCCCCEEEE RVSGYAVNFIKLTREQQIDVINRTMHESM EEECEEEEEEHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TQVLETVKNAWEKFKGEKWKVEIDVRDFILNNVNVYNGDESFLAGATEATKKLWDQVMD CHHHHHHHHHHHHHCCCEEEEEEEHHHHHHCCCEEECCCHHHHCCCHHHHHHHHHHHHH LTKQERENGGVLDMDTKIVSSITSHGPGYLNKELEKVVGVQTDQPFKRSLQPFGGIRMAE HHHHHHHCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHH QSCEAYGFKVDEELSRIFRDWRKTHNQGVFDAYTPEMRAARKSGVITGLPDAYGRGRIIG HHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCEECCCCCCCCCCEEH DYRRVALYGVDRLIEAKEEDLNLTGSVMSEEVIRLREEVSEQIRALQELKEMAASHGFDI HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC SKPATNAREAFQWLYFAYLAAIKEQNGAAMSLGRTSTFLDIYVERDLENGTLTEEEAQEI CCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEEEEECCCCCCCCHHHHHHH VDHFIMKLRLVKFARTPDYNELFSGDPTWVTESIGGIALDGRPLVTKNSFRFLHTLDNLG HHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHCCCCEEECCCCEEECCCHHHHHHHHHCC PAPEPNLTVLWSKQLPQKFKNYCAKMSIKTSAIQYENDDIMRPEYGDDYGIACCVSAMKI CCCCCCEEEEECHHHHHHHHHHHHHCCEEHHEEEECCCCCCCCCCCCCCHHHHHHHHHHH GKQMQFFGARANLAKALLYAINGGKDEKSKVQVGPEFAPITSDVLDYDEVMHKFDMTMEW HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHH LAGLYLNTLNVIHYMHDKYSYERIEMALHDTEVLRTMATGIAGLSVVADSLSAIKYAKVK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PIRDENGIAVDFEIEGDFPKYGNNDDRVDEIAVNLVKTFMNKLRKHKTYRNSVHTMSILT CCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEEE ITSNVVYGKKTGNTPDGRRAGEPFAPGANPMHGRDTKGALASLLSVAKLPYEDAQDGISN EECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH TFSIIPKALGKEEEVQVSNLVSMLDGYAVKEGHHLNINVFNRETLLDAMEHPEKYPQLTI HHHHHHHHHCCCHHHHHHHHHHHHCCCEECCCCEEEEEEECHHHHHHHHHCCCCCCEEEE RVSGYAVNFIKLTREQQIDVINRTMHESM EEECEEEEEEHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA