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The map label for this gene is arcD [H]

Identifier: 152974186

GI number: 152974186

Start: 398580

End: 399995

Strand: Direct

Name: arcD [H]

Synonym: Bcer98_0350

Alternate gene names: 152974186

Gene position: 398580-399995 (Clockwise)

Preceding gene: 152974185

Following gene: 152974187

Centisome position: 9.75

GC content: 35.24

Gene sequence:

>1416_bases
ATGGATGAAGAAAAGAAATTAGGACTCTTTACTTTAATCGCCCTTGTAGTTGGTTCTATGATTGGCGGTGGTGCATTTAA
TTTGGCGAGTGATATGGCAAAAGGTGCTGGCGCAGGGGCTATTATTATTGGATGGATTATAACGGGTATTGGAATGATTG
CCCTTGGTTTATCTTTTCAAAATTTAACTGTCAAAAGACCAGATTTAGATGGTGGCATTTTTAGTTATGCAAAAGCTGGA
TTTGGTAATTTTATGGGATTTAATAGTGCGTGGGGGTATTGGCTGTCAGCTTGGCTAGGGAATGTCGCTTACGGTACATT
ATTATTTGCTTCATTAGGATATTTCTTCCCTATTTTTGAAGGGGGGCAAAACGTTGCATCTATTATTGGAGCAAGTGTAT
TACTTTGGTGCGTTCACATGCTAATTTTACGCGGGGTACAATCAGCAGCACTTGTGAACTTAGTAACGACAATTGCGAAA
TTAGTGCCTGTATTTGTATTTATTATGGTAGGAATTTTCGTTTTTCATTTTGATATTTTCTTAGACGGCTTTTGGGGACA
AGCTGGTTCTTTTTCTTGGGGAGCGGTAGGTAGCCAAGTGAAGAGTACAATGCTTGTCACACTTTGGGTATTTATTGGTG
TTGAAGGAGCTGTTGTTCTATCAAGCCGCGCTAAAAATAGAAGTGATGTTGGAAAAGCGACAGTTATTGGATTAATTGGT
ACATTGATTATTTATATTTTAATTACATTGTTATCCCTAGGACTCATGAAACAAGCAGATGTAGCAAATTTGAGAAATCC
AGCTATGGCATATTTATTTGAAAGTATAGTTGGAAAATGGGGGGCAGTCTTTATTAATTTAGGTTTAGTCATTTCTGTAT
TGGGTGCTTGGTTAGGTTGGACATTACTTGCATCCGAAATTCCATACTTAGCTGCCAAAGATGGAGTATTTCCGAAATGG
TTTGCAAAAGAGAATAAAAACAAAGCTCCTGTGAACTCATTATGGATAACAAATGGGCTCATTCAAATTTTCTTATTAAC
ATTTGTTGTTTCAGATCAAGCATATAACTTTGCTTTCTCTCTTGCATCCTCAGCTATTTTAATTCCGTATGCTTTTTCAG
CATTTTATCAACTTAAATATAGTTTGAAATCTAAAGAAAATGATCGTATAAAAAATATAATCATTGGTTTGGTTGCAAGT
ATTTATGGAGTTTGGTTAGTCTATGCTGCGGGACTAGAATACTTGTTATTAACCATGACTTTATATGCACCTGGTATTTT
CATTTTTTACAATGTTCAAAAGCAAACACATCAAAAACAAATATTTACTCGTATAGAGTTAGCATCATCTGTAGCAATTG
GTGCATTAGCATTATTTGCAATTTATGGATTAATTACAGGTAGTATTACGTTATAA

Upstream 100 bases:

>100_bases
GATATGAAATAAAGAAGGAAGTATTGCTTCCTTCCTTTCTCCTCCTTTGGATATAATCATTCACTATTTGTAATATTGCA
AATTAAGAGAGGTGAGTGGA

Downstream 100 bases:

>100_bases
AAAATGAAATGGAGGGCTGAAATATGAAAAGAAGAAAAATCGTAGTTGCATTAGGAGGAAATGCAATACAATCTGGAAAT
GCTACTGCTGAGGCTCAGCA

Product: arginine/ornithine antiporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 471; Mature: 471

Protein sequence:

>471_residues
MDEEKKLGLFTLIALVVGSMIGGGAFNLASDMAKGAGAGAIIIGWIITGIGMIALGLSFQNLTVKRPDLDGGIFSYAKAG
FGNFMGFNSAWGYWLSAWLGNVAYGTLLFASLGYFFPIFEGGQNVASIIGASVLLWCVHMLILRGVQSAALVNLVTTIAK
LVPVFVFIMVGIFVFHFDIFLDGFWGQAGSFSWGAVGSQVKSTMLVTLWVFIGVEGAVVLSSRAKNRSDVGKATVIGLIG
TLIIYILITLLSLGLMKQADVANLRNPAMAYLFESIVGKWGAVFINLGLVISVLGAWLGWTLLASEIPYLAAKDGVFPKW
FAKENKNKAPVNSLWITNGLIQIFLLTFVVSDQAYNFAFSLASSAILIPYAFSAFYQLKYSLKSKENDRIKNIIIGLVAS
IYGVWLVYAAGLEYLLLTMTLYAPGIFIFYNVQKQTHQKQIFTRIELASSVAIGALALFAIYGLITGSITL

Sequences:

>Translated_471_residues
MDEEKKLGLFTLIALVVGSMIGGGAFNLASDMAKGAGAGAIIIGWIITGIGMIALGLSFQNLTVKRPDLDGGIFSYAKAG
FGNFMGFNSAWGYWLSAWLGNVAYGTLLFASLGYFFPIFEGGQNVASIIGASVLLWCVHMLILRGVQSAALVNLVTTIAK
LVPVFVFIMVGIFVFHFDIFLDGFWGQAGSFSWGAVGSQVKSTMLVTLWVFIGVEGAVVLSSRAKNRSDVGKATVIGLIG
TLIIYILITLLSLGLMKQADVANLRNPAMAYLFESIVGKWGAVFINLGLVISVLGAWLGWTLLASEIPYLAAKDGVFPKW
FAKENKNKAPVNSLWITNGLIQIFLLTFVVSDQAYNFAFSLASSAILIPYAFSAFYQLKYSLKSKENDRIKNIIIGLVAS
IYGVWLVYAAGLEYLLLTMTLYAPGIFIFYNVQKQTHQKQIFTRIELASSVAIGALALFAIYGLITGSITL
>Mature_471_residues
MDEEKKLGLFTLIALVVGSMIGGGAFNLASDMAKGAGAGAIIIGWIITGIGMIALGLSFQNLTVKRPDLDGGIFSYAKAG
FGNFMGFNSAWGYWLSAWLGNVAYGTLLFASLGYFFPIFEGGQNVASIIGASVLLWCVHMLILRGVQSAALVNLVTTIAK
LVPVFVFIMVGIFVFHFDIFLDGFWGQAGSFSWGAVGSQVKSTMLVTLWVFIGVEGAVVLSSRAKNRSDVGKATVIGLIG
TLIIYILITLLSLGLMKQADVANLRNPAMAYLFESIVGKWGAVFINLGLVISVLGAWLGWTLLASEIPYLAAKDGVFPKW
FAKENKNKAPVNSLWITNGLIQIFLLTFVVSDQAYNFAFSLASSAILIPYAFSAFYQLKYSLKSKENDRIKNIIIGLVAS
IYGVWLVYAAGLEYLLLTMTLYAPGIFIFYNVQKQTHQKQIFTRIELASSVAIGALALFAIYGLITGSITL

Specific function: Catalyzes an electroneutral exchange between arginine and ornithine to allow high-efficiency energy conversion in the arginine deiminase pathway [H]

COG id: COG0531

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787890, Length=450, Percent_Identity=46.2222222222222, Blast_Score=398, Evalue=1e-112,
Organism=Escherichia coli, GI2367353, Length=417, Percent_Identity=29.4964028776978, Blast_Score=161, Evalue=9e-41,
Organism=Escherichia coli, GI1786908, Length=426, Percent_Identity=26.5258215962441, Blast_Score=108, Evalue=8e-25,
Organism=Escherichia coli, GI1790575, Length=450, Percent_Identity=25.5555555555556, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI87082250, Length=361, Percent_Identity=25.207756232687, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1786302, Length=396, Percent_Identity=23.2323232323232, Blast_Score=66, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293
- InterPro:   IPR004754
- InterPro:   IPR022461 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 50887; Mature: 50887

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure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HHCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9053381; 11792842 [H]