Click here to switch to the map view.

The map label for this gene is ydhO [H]

Identifier: 152970545

GI number: 152970545

Start: 2186816

End: 2187571

Strand: Direct

Name: ydhO [H]

Synonym: KPN_01993

Alternate gene names: 152970545

Gene position: 2186816-2187571 (Clockwise)

Preceding gene: 152970543

Following gene: 152970546

Centisome position: 41.14

GC content: 57.41

Gene sequence:

>756_bases
TTGCCCGCGAAAAGTGGCTCAGAGCGCAAGAAAAAAGCAACCAGTCAAAAAACTAAAACCACCGCTAAAACCACCAGTAA
AAAGTCCTCGCGCACCCGGCTCCCTACCCGCACTACCGCAGCAAGCCAAACCGCACTTCATCGTCAGGCCGCCGGCGCGA
CGAAAAAATGCGTGCTGCGTAAAGGTTATAAAAAGCAGTGCGCGAAAACGGTCGCCGCCAGCGCCGAGCCGACCCTGGCG
CTAAACAGCGTCAAAAGCAAATGCGTGGTGCGCAAGGGCTATAAAAAACGCTGTAAGCCCGAGGCCAGCGAAGCGAATTT
AACGATCGCCGACGCCCACAAGGTCCGGGTGCAAAAAGCGCAAAGTACCGCGATGAATAAACTGATGGGCCAGTTGGGTA
AACCCTATCGCTGGGGCGGCACCTCGCCGCGCACCGGGTTTGACTGCAGCGGGCTGGTCTATTACGCCTATAAGGACCTG
GTCAAGATCCACATCCCGCGTACGGCCAACGAAATGTACCACCTGCGCGATGCGCGTCCGGTGGATCGTGATGAACTGCA
GAGCGGCGATTTAGTCTTCTTCCGCACCCGCGGACGGGGCGCTGCCGACCATGTCGGCGTCTACGTCGGCAACGGAAAAT
TCATTCAGTCGCCGCGCACAGGTCGTGATATTCAAATCACCTCCCTGAGCGAGGATTACTGGGTTCGCCATTATGTCGGC
GCTCGTCGCGTCATGACGCCGAAAACCATTCGCTGA

Upstream 100 bases:

>100_bases
AATCGCGATATCGCTCTGTGCATTACTGTTCACGTCTATCTCATTCACGCCACTGGCTCAGGCATCAGGGCATACGCACG
CCTCCGCTTCGCCAAAAGCG

Downstream 100 bases:

>100_bases
TCCCGGTCTGCCGCTGCGGCGGCAGACCGCCTCTCCTGCTCGATCTCCATCCCCACCCGCAAGGGATATTGCAGATTGCT
CTCTTTGCCCGGCGTATCAC

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MPAKSGSERKKKATSQKTKTTAKTTSKKSSRTRLPTRTTAASQTALHRQAAGATKKCVLRKGYKKQCAKTVAASAEPTLA
LNSVKSKCVVRKGYKKRCKPEASEANLTIADAHKVRVQKAQSTAMNKLMGQLGKPYRWGGTSPRTGFDCSGLVYYAYKDL
VKIHIPRTANEMYHLRDARPVDRDELQSGDLVFFRTRGRGAADHVGVYVGNGKFIQSPRTGRDIQITSLSEDYWVRHYVG
ARRVMTPKTIR

Sequences:

>Translated_251_residues
MPAKSGSERKKKATSQKTKTTAKTTSKKSSRTRLPTRTTAASQTALHRQAAGATKKCVLRKGYKKQCAKTVAASAEPTLA
LNSVKSKCVVRKGYKKRCKPEASEANLTIADAHKVRVQKAQSTAMNKLMGQLGKPYRWGGTSPRTGFDCSGLVYYAYKDL
VKIHIPRTANEMYHLRDARPVDRDELQSGDLVFFRTRGRGAADHVGVYVGNGKFIQSPRTGRDIQITSLSEDYWVRHYVG
ARRVMTPKTIR
>Mature_250_residues
PAKSGSERKKKATSQKTKTTAKTTSKKSSRTRLPTRTTAASQTALHRQAAGATKKCVLRKGYKKQCAKTVAASAEPTLAL
NSVKSKCVVRKGYKKRCKPEASEANLTIADAHKVRVQKAQSTAMNKLMGQLGKPYRWGGTSPRTGFDCSGLVYYAYKDLV
KIHIPRTANEMYHLRDARPVDRDELQSGDLVFFRTRGRGAADHVGVYVGNGKFIQSPRTGRDIQITSLSEDYWVRHYVGA
RRVMTPKTIR

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=184, Percent_Identity=74.4565217391304, Blast_Score=296, Evalue=9e-82,
Organism=Escherichia coli, GI1786421, Length=251, Percent_Identity=37.8486055776892, Blast_Score=169, Evalue=1e-43,
Organism=Escherichia coli, GI1788501, Length=132, Percent_Identity=35.6060606060606, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788001, Length=119, Percent_Identity=36.1344537815126, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 27879; Mature: 27748

Theoretical pI: Translated: 11.14; Mature: 11.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAKSGSERKKKATSQKTKTTAKTTSKKSSRTRLPTRTTAASQTALHRQAAGATKKCVLR
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
KGYKKQCAKTVAASAEPTLALNSVKSKCVVRKGYKKRCKPEASEANLTIADAHKVRVQKA
CCHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHH
QSTAMNKLMGQLGKPYRWGGTSPRTGFDCSGLVYYAYKDLVKIHIPRTANEMYHLRDARP
HHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCHHHEECCEEEEECCCCCCHHHHHCCCCC
VDRDELQSGDLVFFRTRGRGAADHVGVYVGNGKFIQSPRTGRDIQITSLSEDYWVRHYVG
CCHHHCCCCCEEEEEECCCCCCCCEEEEECCCEEEECCCCCCEEEEEECCCHHHHHHHHC
ARRVMTPKTIR
CCCCCCCCCCC
>Mature Secondary Structure 
PAKSGSERKKKATSQKTKTTAKTTSKKSSRTRLPTRTTAASQTALHRQAAGATKKCVLR
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
KGYKKQCAKTVAASAEPTLALNSVKSKCVVRKGYKKRCKPEASEANLTIADAHKVRVQKA
CCHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHH
QSTAMNKLMGQLGKPYRWGGTSPRTGFDCSGLVYYAYKDLVKIHIPRTANEMYHLRDARP
HHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCHHHEECCEEEEECCCCCCHHHHHCCCCC
VDRDELQSGDLVFFRTRGRGAADHVGVYVGNGKFIQSPRTGRDIQITSLSEDYWVRHYVG
CCHHHCCCCCEEEEEECCCCCCCCEEEEECCCEEEECCCCCCEEEEEECCCHHHHHHHHC
ARRVMTPKTIR
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]