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The map label for this gene is yidP [H]

Identifier: 152970236

GI number: 152970236

Start: 1863125

End: 1863823

Strand: Direct

Name: yidP [H]

Synonym: KPN_01684

Alternate gene names: 152970236

Gene position: 1863125-1863823 (Clockwise)

Preceding gene: 152970229

Following gene: 152970237

Centisome position: 35.05

GC content: 55.65

Gene sequence:

>699_bases
GTGATTTATAAAAAGATTGCCACTGAACTGCGGACCCGCATCAACAGCGACGACTATGCCGTCGGCGATATGCTGCCCAG
CGAAAAAGCGCTCGCCGCGGAGCTGAAGGTCTCGGTGATGACGCTGCGCAAAGCGCTGGCGCTACTGGAGGAAGAAAAGC
TGATCGCGCGGCGGCACGGCAGCGGAACCTGCATTGTGCGTAAAAGTAACTATCATGGCGGGGAACTGGAGGGCTTTAAC
TACCAGATGCAGGTGGTGGGCGTCACCAACTACCGTAACAAAGTTATTGAATTTACGCTGCTTGATGCCCCGCCAGCCAT
TGCCCAGCAGTTAAAGATCCAGCCGGGGGAGAAAGTTTATTACGTCAGACGGCTGCGGCTGATCGATGAGGTCCCAATCC
TGGTGGAAAACAGCTATATCCCATTCGCCACCTTCCCCTGGCTCAGCGTGGGTAACCTCGAGCAGTCTAAGTTCAACTAT
TTCAAAAAAGAGTGCCATATCACCATCATCGAGAGCCACCGCAGCTATACCCCGGTGCTGGCGACCCGTGAGCAGGCGGA
GCTGCTGCAGGTGGCGCCAAACAGCCTCCTGCTGCGGGTGCAGTCGATCAGCTACGCCCAGAACCGGGCGATCGTCGATT
TCTCAGAGATCTACCAGAACACCAGTAAGTACAATGTGAAGCACATTACCCGCCGCTAG

Upstream 100 bases:

>100_bases
ATTGTTGATTTTTTCGCTGCAAGATAAAAATAATCATCTAATTACATGAAGTTATTCATGGTTACCGTTGACTGGCGCCA
CTCCATCGAGACATCTAAAA

Downstream 100 bases:

>100_bases
AGGATTCAGACCAGCCATCCCCGGGCGATCAGCTCTATCCCCAGCGCCAGCAGGAACAACAGAAAGCCCTGACGAAAGCG
CTGCGGGCTGAGACGCGAGC

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MIYKKIATELRTRINSDDYAVGDMLPSEKALAAELKVSVMTLRKALALLEEEKLIARRHGSGTCIVRKSNYHGGELEGFN
YQMQVVGVTNYRNKVIEFTLLDAPPAIAQQLKIQPGEKVYYVRRLRLIDEVPILVENSYIPFATFPWLSVGNLEQSKFNY
FKKECHITIIESHRSYTPVLATREQAELLQVAPNSLLLRVQSISYAQNRAIVDFSEIYQNTSKYNVKHITRR

Sequences:

>Translated_232_residues
MIYKKIATELRTRINSDDYAVGDMLPSEKALAAELKVSVMTLRKALALLEEEKLIARRHGSGTCIVRKSNYHGGELEGFN
YQMQVVGVTNYRNKVIEFTLLDAPPAIAQQLKIQPGEKVYYVRRLRLIDEVPILVENSYIPFATFPWLSVGNLEQSKFNY
FKKECHITIIESHRSYTPVLATREQAELLQVAPNSLLLRVQSISYAQNRAIVDFSEIYQNTSKYNVKHITRR
>Mature_232_residues
MIYKKIATELRTRINSDDYAVGDMLPSEKALAAELKVSVMTLRKALALLEEEKLIARRHGSGTCIVRKSNYHGGELEGFN
YQMQVVGVTNYRNKVIEFTLLDAPPAIAQQLKIQPGEKVYYVRRLRLIDEVPILVENSYIPFATFPWLSVGNLEQSKFNY
FKKECHITIIESHRSYTPVLATREQAELLQVAPNSLLLRVQSISYAQNRAIVDFSEIYQNTSKYNVKHITRR

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790118, Length=233, Percent_Identity=43.7768240343348, Blast_Score=189, Evalue=1e-49,
Organism=Escherichia coli, GI1786950, Length=232, Percent_Identity=29.3103448275862, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI87082252, Length=227, Percent_Identity=25.1101321585903, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI1788418, Length=220, Percent_Identity=28.1818181818182, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790540, Length=207, Percent_Identity=28.9855072463768, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 26640; Mature: 26640

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYKKIATELRTRINSDDYAVGDMLPSEKALAAELKVSVMTLRKALALLEEEKLIARRHG
CCHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SGTCIVRKSNYHGGELEGFNYQMQVVGVTNYRNKVIEFTLLDAPPAIAQQLKIQPGEKVY
CCEEEEEECCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCHHHHHHEECCCCCEEH
YVRRLRLIDEVPILVENSYIPFATFPWLSVGNLEQSKFNYFKKECHITIIESHRSYTPVL
HHHHHHHHHCCCEEEECCCCCEEECCCCCCCCCCHHHHHHHHHHEEEEEEECCCCCCCEE
ATREQAELLQVAPNSLLLRVQSISYAQNRAIVDFSEIYQNTSKYNVKHITRR
ECHHHHHHHHHCCCHHEEEEECCCHHCCCEEEEHHHHHCCCCCCCEEEECCC
>Mature Secondary Structure
MIYKKIATELRTRINSDDYAVGDMLPSEKALAAELKVSVMTLRKALALLEEEKLIARRHG
CCHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SGTCIVRKSNYHGGELEGFNYQMQVVGVTNYRNKVIEFTLLDAPPAIAQQLKIQPGEKVY
CCEEEEEECCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCHHHHHHEECCCCCEEH
YVRRLRLIDEVPILVENSYIPFATFPWLSVGNLEQSKFNYFKKECHITIIESHRSYTPVL
HHHHHHHHHCCCEEEECCCCCEEECCCCCCCCCCHHHHHHHHHHEEEEEEECCCCCCCEE
ATREQAELLQVAPNSLLLRVQSISYAQNRAIVDFSEIYQNTSKYNVKHITRR
ECHHHHHHHHHCCCHHEEEEECCCHHCCCEEEEHHHHHCCCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]