Click here to switch to the map view.

The map label for this gene is cydA [H]

Identifier: 152969707

GI number: 152969707

Start: 1306793

End: 1308199

Strand: Direct

Name: cydA [H]

Synonym: KPN_01153

Alternate gene names: 152969707

Gene position: 1306793-1308199 (Clockwise)

Preceding gene: 152969706

Following gene: 152969708

Centisome position: 24.59

GC content: 58.49

Gene sequence:

>1407_bases
ATGTTTGAATTCGACGCGTTTCATCTGGCCCGATTGCAATTCGCCTTTACCGTATCCTTCCATATCCTCTTTCCGGCCAT
CACCATCGGGCTTGCCAGCTACCTTGTGGTGCTTGAGGGGATGTGGCTGCGAACCAGGGATAATGTCTGGCGTTCACTCT
ACAATTTCTGGCTGAAAATTTTTGCCGTCAATTTTGGCATGGGCGTAGTCTCCGGATTAGTCATGTCCTATCAGTTCGGC
ACCAACTGGAGCGGATTTTCCCAGTTCGCTGGCAGTATTACCGGCCCGCTGCTACTGTACGAAGTGCTGACCGCCTTCTT
CCTTGAAGCGGGATTCCTCGGGGTGATGCTGTTTGGCTGGAATAAAGTGCCGCCAGCGCTGCATTTTTTTACCACCTGCA
TGGTGGCGCTTGGCACGTTGGTTTCTACCTTCTGGATCCTTGCCTCCAATAGCTGGATGCAGACGCCGCAGGGTTTTATC
ATCGAAAATGGCCATCTCATCCCGCAGGACTGGCTGGCGATTATCTTTAACCCCTCTTTTCCGTATCGCTTGTTCCATAT
GGCGATAGCCGCGTTTCTCAGCAGCGCCATGTTCGTCGGGGCCTCTGCCGCGTGGCATCTTCTGCGCGGCAACGACTCGC
CGGCCATCCGCAAAATGCTGTCGATGGCGATGTGGATGGCGCTACTGGTGGCGCCGATCCAGGCGGTGGTGGGGGATATG
CATGGTCTTAACACTCTTGAGCATCAGCCGGCGAAGATCGCGGCCATCGAAGGGCACTGGGAAAATCGCCCCGGCGAGGC
CACGCCGCTGCTGCTGTTTGGCCTGCCGGACATGGAGCAGGAGCGGACCCGCTATGGTCTTGAGATCCCCGCTCTCGGTA
GCCTGATCCTTACCCACAGCCTGCATAAGCAGGTGCCGGCCCTGAAAGACTTCCCGAAAGAGGACCGACCCTATTCGCCC
GCCGTCTTCTGGTCGTTTCGCATCATGGTCGGGATGGGCGTGTTGATGATCGCCTTAGGGATCTGCAGCGCCTGGCTGCG
CTATCGGCGGCGGCTGTACCACTCGCGTCCCTTCCAGTGGTTTGCGCTCTGTATGGGGCCCGCCGGTCTTATTGCCCTGG
TCGCCGGGTGGGTGACCACCGAGATGGGCCGCCAGCCGTGGGTGATATACGGGTTGCTGCGCACGCGGGATGCGGTGTCG
TTGCACAGCACCCTGCAGATGGCCATCAGCCTGCTGGTATTTATCGTGGTTTACTGCGCCGTGTTTGGCGTGGGGTATTA
CTACATTTTCCGGCTTATCAAAAAAGGGCCGCAGCCGGTGACGGAGCTGACCTCGCAAACCGCAGGCACCCCGGCGCGTC
CGCTCTCAGCGGCTGAGCCGGTGCGTGATGAGGAGAACGCATCATGA

Upstream 100 bases:

>100_bases
GAACTCGGCGCCGGGAAGCAAAACACTTCATCATCGGCTAAGTGATGTTCGCATGAGCCCCGGCTGCGGCCGGGGCGATT
CACAATGATGGGTGTGGAAT

Downstream 100 bases:

>100_bases
GCATCGATATCTCGGTGATTTGGTTTGTCATCATTGTCTTCGCCTCGCTGATGTATATCGTGATGGATGGTTTCGATTTA
GGTATTGGGATGCTGTTCAG

Product: cytochrome oxidase bd-II, subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 468; Mature: 468

Protein sequence:

>468_residues
MFEFDAFHLARLQFAFTVSFHILFPAITIGLASYLVVLEGMWLRTRDNVWRSLYNFWLKIFAVNFGMGVVSGLVMSYQFG
TNWSGFSQFAGSITGPLLLYEVLTAFFLEAGFLGVMLFGWNKVPPALHFFTTCMVALGTLVSTFWILASNSWMQTPQGFI
IENGHLIPQDWLAIIFNPSFPYRLFHMAIAAFLSSAMFVGASAAWHLLRGNDSPAIRKMLSMAMWMALLVAPIQAVVGDM
HGLNTLEHQPAKIAAIEGHWENRPGEATPLLLFGLPDMEQERTRYGLEIPALGSLILTHSLHKQVPALKDFPKEDRPYSP
AVFWSFRIMVGMGVLMIALGICSAWLRYRRRLYHSRPFQWFALCMGPAGLIALVAGWVTTEMGRQPWVIYGLLRTRDAVS
LHSTLQMAISLLVFIVVYCAVFGVGYYYIFRLIKKGPQPVTELTSQTAGTPARPLSAAEPVRDEENAS

Sequences:

>Translated_468_residues
MFEFDAFHLARLQFAFTVSFHILFPAITIGLASYLVVLEGMWLRTRDNVWRSLYNFWLKIFAVNFGMGVVSGLVMSYQFG
TNWSGFSQFAGSITGPLLLYEVLTAFFLEAGFLGVMLFGWNKVPPALHFFTTCMVALGTLVSTFWILASNSWMQTPQGFI
IENGHLIPQDWLAIIFNPSFPYRLFHMAIAAFLSSAMFVGASAAWHLLRGNDSPAIRKMLSMAMWMALLVAPIQAVVGDM
HGLNTLEHQPAKIAAIEGHWENRPGEATPLLLFGLPDMEQERTRYGLEIPALGSLILTHSLHKQVPALKDFPKEDRPYSP
AVFWSFRIMVGMGVLMIALGICSAWLRYRRRLYHSRPFQWFALCMGPAGLIALVAGWVTTEMGRQPWVIYGLLRTRDAVS
LHSTLQMAISLLVFIVVYCAVFGVGYYYIFRLIKKGPQPVTELTSQTAGTPARPLSAAEPVRDEENAS
>Mature_468_residues
MFEFDAFHLARLQFAFTVSFHILFPAITIGLASYLVVLEGMWLRTRDNVWRSLYNFWLKIFAVNFGMGVVSGLVMSYQFG
TNWSGFSQFAGSITGPLLLYEVLTAFFLEAGFLGVMLFGWNKVPPALHFFTTCMVALGTLVSTFWILASNSWMQTPQGFI
IENGHLIPQDWLAIIFNPSFPYRLFHMAIAAFLSSAMFVGASAAWHLLRGNDSPAIRKMLSMAMWMALLVAPIQAVVGDM
HGLNTLEHQPAKIAAIEGHWENRPGEATPLLLFGLPDMEQERTRYGLEIPALGSLILTHSLHKQVPALKDFPKEDRPYSP
AVFWSFRIMVGMGVLMIALGICSAWLRYRRRLYHSRPFQWFALCMGPAGLIALVAGWVTTEMGRQPWVIYGLLRTRDAVS
LHSTLQMAISLLVFIVVYCAVFGVGYYYIFRLIKKGPQPVTELTSQTAGTPARPLSAAEPVRDEENAS

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=315, Percent_Identity=37.4603174603175, Blast_Score=228, Evalue=9e-61,
Organism=Escherichia coli, GI87081779, Length=308, Percent_Identity=35.3896103896104, Blast_Score=216, Evalue=4e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 52483; Mature: 52483

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFEFDAFHLARLQFAFTVSFHILFPAITIGLASYLVVLEGMWLRTRDNVWRSLYNFWLKI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
FAVNFGMGVVSGLVMSYQFGTNWSGFSQFAGSITGPLLLYEVLTAFFLEAGFLGVMLFGW
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NKVPPALHFFTTCMVALGTLVSTFWILASNSWMQTPQGFIIENGHLIPQDWLAIIFNPSF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEECCCCCEEEEECCCC
PYRLFHMAIAAFLSSAMFVGASAAWHLLRGNDSPAIRKMLSMAMWMALLVAPIQAVVGDM
CHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
HGLNTLEHQPAKIAAIEGHWENRPGEATPLLLFGLPDMEQERTRYGLEIPALGSLILTHS
HCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEECCCCCHHHHHHCCCCCCHHHHHHHHHH
LHKQVPALKDFPKEDRPYSPAVFWSFRIMVGMGVLMIALGICSAWLRYRRRLYHSRPFQW
HHHHCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
FALCMGPAGLIALVAGWVTTEMGRQPWVIYGLLRTRDAVSLHSTLQMAISLLVFIVVYCA
HHHHHCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
VFGVGYYYIFRLIKKGPQPVTELTSQTAGTPARPLSAAEPVRDEENAS
HHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MFEFDAFHLARLQFAFTVSFHILFPAITIGLASYLVVLEGMWLRTRDNVWRSLYNFWLKI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
FAVNFGMGVVSGLVMSYQFGTNWSGFSQFAGSITGPLLLYEVLTAFFLEAGFLGVMLFGW
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NKVPPALHFFTTCMVALGTLVSTFWILASNSWMQTPQGFIIENGHLIPQDWLAIIFNPSF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEECCCCCEEEEECCCC
PYRLFHMAIAAFLSSAMFVGASAAWHLLRGNDSPAIRKMLSMAMWMALLVAPIQAVVGDM
CHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
HGLNTLEHQPAKIAAIEGHWENRPGEATPLLLFGLPDMEQERTRYGLEIPALGSLILTHS
HCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEECCCCCHHHHHHCCCCCCHHHHHHHHHH
LHKQVPALKDFPKEDRPYSPAVFWSFRIMVGMGVLMIALGICSAWLRYRRRLYHSRPFQW
HHHHCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
FALCMGPAGLIALVAGWVTTEMGRQPWVIYGLLRTRDAVSLHSTLQMAISLLVFIVVYCA
HHHHHCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
VFGVGYYYIFRLIKKGPQPVTELTSQTAGTPARPLSAAEPVRDEENAS
HHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]