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The map label for this gene is cydB [H]

Identifier: 152969708

GI number: 152969708

Start: 1308196

End: 1309206

Strand: Direct

Name: cydB [H]

Synonym: KPN_01154

Alternate gene names: 152969708

Gene position: 1308196-1309206 (Clockwise)

Preceding gene: 152969707

Following gene: 152969710

Centisome position: 24.61

GC content: 59.74

Gene sequence:

>1011_bases
ATGAGCATCGATATCTCGGTGATTTGGTTTGTCATCATTGTCTTCGCCTCGCTGATGTATATCGTGATGGATGGTTTCGA
TTTAGGTATTGGGATGCTGTTCAGCGTGGTGCATGATGGCGAAGAGCGCGATGTGATGGTCAACAGCGTCGCCCCCGTCT
GGGATGGTAACGAAACCTGGCTGGTGCTCGGCGGGGCAGGGCTGTTCGGCGCCTTTCCGCTGGCCTATGCGGTGATCACC
GATGCGCTGGTTATCCCGCTGACGGCGATGCTCATCGGCCTGATTTTTCGCGGCGTGGCCTTTGAATTTCGTTTTAAAGC
GGTTCCCTCGCATCGCATCTTCTGGGACTATGCCTTTGCCGGCGGCTCGCTGTTGGCGACCTTCAGCCAGGGGATTGTCG
TCGGCGCGTTTATCAACGGCTTTGCGGTGGCTGACCGCCGCTTCGCCGGTTCGACGCTGGACTGGCTTACCCCTTTCAAT
CTGTTCTGCGGTCTGGGGCTGGTGGTGGCCTATCTGCTGCTGGGCACCACGTGGTTGATTATGAAAAGCGAAGGCGCGCT
GCAGCAGCGGATGCGCGAGCTGACCCGCAAGGTACTGCTGGCGCTGATGGCGGTGATCGCGGTGGTCAGCGTCTGGACGC
CGTTGGGCTGGCGCTACGTGGCGGAACGCTGGTTTACGCTGCCCAATTTCTTCTGGTTCGTGCCGGTGCCGATTTTGGTG
TTGGCTCTGAGCCTGTGGATCTGGCGCCTGAGCGCGCGCCCCGCCAGCCATGCCCGTCCCTTTATCCTGACGCTGGGCCT
GATTTTCCTCGGCTTCAGCGGGTTGGGGATCAGCGTCTGGCCAAACATTATTCCACCGCATATCTCCCTGTGGGATGCCG
CTGCGCCGCCCTCCAGCCAGGTATTTATGCTGCCGGGGGCGCTGCTCATTATCCCGGTGATCCTGATGTATACCGCCTGG
AGCTACTACGTCTTTCGCGGCAAAGTCTCCGGCAGCGAGGGCTATCATTGA

Upstream 100 bases:

>100_bases
AAGGGCCGCAGCCGGTGACGGAGCTGACCTCGCAAACCGCAGGCACCCCGGCGCGTCCGCTCTCAGCGGCTGAGCCGGTG
CGTGATGAGGAGAACGCATC

Downstream 100 bases:

>100_bases
GCCTGATTCGCGCCGGCAGGTGAGGATTTGCCGGCGCGTCGCGCCGTCCGGTCAGGGATGACCGAGAGGGATGCGCACAA
ACCGGTGATCTGCTGCAACG

Product: cytochrome oxidase bd-II, subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MSIDISVIWFVIIVFASLMYIVMDGFDLGIGMLFSVVHDGEERDVMVNSVAPVWDGNETWLVLGGAGLFGAFPLAYAVIT
DALVIPLTAMLIGLIFRGVAFEFRFKAVPSHRIFWDYAFAGGSLLATFSQGIVVGAFINGFAVADRRFAGSTLDWLTPFN
LFCGLGLVVAYLLLGTTWLIMKSEGALQQRMRELTRKVLLALMAVIAVVSVWTPLGWRYVAERWFTLPNFFWFVPVPILV
LALSLWIWRLSARPASHARPFILTLGLIFLGFSGLGISVWPNIIPPHISLWDAAAPPSSQVFMLPGALLIIPVILMYTAW
SYYVFRGKVSGSEGYH

Sequences:

>Translated_336_residues
MSIDISVIWFVIIVFASLMYIVMDGFDLGIGMLFSVVHDGEERDVMVNSVAPVWDGNETWLVLGGAGLFGAFPLAYAVIT
DALVIPLTAMLIGLIFRGVAFEFRFKAVPSHRIFWDYAFAGGSLLATFSQGIVVGAFINGFAVADRRFAGSTLDWLTPFN
LFCGLGLVVAYLLLGTTWLIMKSEGALQQRMRELTRKVLLALMAVIAVVSVWTPLGWRYVAERWFTLPNFFWFVPVPILV
LALSLWIWRLSARPASHARPFILTLGLIFLGFSGLGISVWPNIIPPHISLWDAAAPPSSQVFMLPGALLIIPVILMYTAW
SYYVFRGKVSGSEGYH
>Mature_335_residues
SIDISVIWFVIIVFASLMYIVMDGFDLGIGMLFSVVHDGEERDVMVNSVAPVWDGNETWLVLGGAGLFGAFPLAYAVITD
ALVIPLTAMLIGLIFRGVAFEFRFKAVPSHRIFWDYAFAGGSLLATFSQGIVVGAFINGFAVADRRFAGSTLDWLTPFNL
FCGLGLVVAYLLLGTTWLIMKSEGALQQRMRELTRKVLLALMAVIAVVSVWTPLGWRYVAERWFTLPNFFWFVPVPILVL
ALSLWIWRLSARPASHARPFILTLGLIFLGFSGLGISVWPNIIPPHISLWDAAAPPSSQVFMLPGALLIIPVILMYTAWS
YYVFRGKVSGSEGYH

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=367, Percent_Identity=29.4277929155313, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1787213, Length=361, Percent_Identity=29.0858725761773, Blast_Score=128, Evalue=4e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 37207; Mature: 37075

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIDISVIWFVIIVFASLMYIVMDGFDLGIGMLFSVVHDGEERDVMVNSVAPVWDGNETW
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCEE
LVLGGAGLFGAFPLAYAVITDALVIPLTAMLIGLIFRGVAFEFRFKAVPSHRIFWDYAFA
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEEEEEECC
GGSLLATFSQGIVVGAFINGFAVADRRFAGSTLDWLTPFNLFCGLGLVVAYLLLGTTWLI
CCHHHHHHHCCEEEEHHHHHHHHHCCHHCCCCHHHCCHHHHHHHHHHHHHHHHHCCCEEE
MKSEGALQQRMRELTRKVLLALMAVIAVVSVWTPLGWRYVAERWFTLPNFFWFVPVPILV
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHH
LALSLWIWRLSARPASHARPFILTLGLIFLGFSGLGISVWPNIIPPHISLWDAAAPPSSQ
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCC
VFMLPGALLIIPVILMYTAWSYYVFRGKVSGSEGYH
EEECCCHHHHHHHHHHHHHHHHEEEEEEECCCCCCC
>Mature Secondary Structure 
SIDISVIWFVIIVFASLMYIVMDGFDLGIGMLFSVVHDGEERDVMVNSVAPVWDGNETW
CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCEE
LVLGGAGLFGAFPLAYAVITDALVIPLTAMLIGLIFRGVAFEFRFKAVPSHRIFWDYAFA
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEEEEEECC
GGSLLATFSQGIVVGAFINGFAVADRRFAGSTLDWLTPFNLFCGLGLVVAYLLLGTTWLI
CCHHHHHHHCCEEEEHHHHHHHHHCCHHCCCCHHHCCHHHHHHHHHHHHHHHHHCCCEEE
MKSEGALQQRMRELTRKVLLALMAVIAVVSVWTPLGWRYVAERWFTLPNFFWFVPVPILV
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHH
LALSLWIWRLSARPASHARPFILTLGLIFLGFSGLGISVWPNIIPPHISLWDAAAPPSSQ
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCC
VFMLPGALLIIPVILMYTAWSYYVFRGKVSGSEGYH
EEECCCHHHHHHHHHHHHHHHHEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]