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The map label for this gene is exoD [H]

Identifier: 150398659

GI number: 150398659

Start: 3681302

End: 3681940

Strand: Reverse

Name: exoD [H]

Synonym: Smed_3473

Alternate gene names: 150398659

Gene position: 3681940-3681302 (Counterclockwise)

Preceding gene: 150398660

Following gene: 150398656

Centisome position: 97.36

GC content: 60.72

Gene sequence:

>639_bases
ATGGCCGTCGAGTTCGGCGATACGCAGCGTAGTCTCAGCGAGACGCTCACCGGCATGATCGCGGCGATCAGGGGCAATAC
GATCACGCTGCGCCAACTGATGATCGAAATTGGCGAGCAGGGCTTTCTTCTCCTCTGTGCGCTGCTGACTCTGCCCTTCC
TGATTCCCGTTTCCATTCCCGGCGTCAGCACGGTCTTCGGAGCGGCCATCATTCTGATTTCGCTCGCAATCACGCTCAAT
CGCCTGCCGTGGCTGCCCAAACGCATTCTGGACCGCGAGATCGAGACGGAAAAGCTCGTGCCCACGCTGCGGAAGGGCGC
TGCCCTGGTCTCGAAGCTGGACCGCTACGTGCGTCCGCGGCTCAACTTCCTGACCGAGGGCACCCTCATGAACCGCTTCA
ACGGCCTGATGATCATGGCCGGGGGCGTACTTCTCATGTTTCCGCTCGGATTGATTCCACTGTCGAACACGCTTCCCGGC
ATCGCCATCCTACTCCTGTCGGTCGGCATCATTCAGCGCGACGGGCTGATGGTGGCCGGCGGCTATTTGTTCCTGGTTGC
GACGACCATCTATTTCGCAGTCCTCGGCTATGCCGCTTTCGCCGCCGGCCAGGGACTGTCGCACTTCTTCGTTTCGTGA

Upstream 100 bases:

>100_bases
CACGCGCCCGCGCTATGGTCTGTGTCATCGAGTTCGGGATAGAAAATGCGGATGGCCGTCCAACGAACCGAGCGACCCGC
AAAGCTGAGAGGGGTAAATC

Downstream 100 bases:

>100_bases
GCGGAAAACACCAGAGGCAGCCGACTCACACCTGTCCTGGCATGGCGAAGTCGCCGCCGCGCGGGCCTGCCCTCCGCTAA
AGATGCTTGTAGAAGAACGT

Product: exopolysaccharide synthesis ExoD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MAVEFGDTQRSLSETLTGMIAAIRGNTITLRQLMIEIGEQGFLLLCALLTLPFLIPVSIPGVSTVFGAAIILISLAITLN
RLPWLPKRILDREIETEKLVPTLRKGAALVSKLDRYVRPRLNFLTEGTLMNRFNGLMIMAGGVLLMFPLGLIPLSNTLPG
IAILLLSVGIIQRDGLMVAGGYLFLVATTIYFAVLGYAAFAAGQGLSHFFVS

Sequences:

>Translated_212_residues
MAVEFGDTQRSLSETLTGMIAAIRGNTITLRQLMIEIGEQGFLLLCALLTLPFLIPVSIPGVSTVFGAAIILISLAITLN
RLPWLPKRILDREIETEKLVPTLRKGAALVSKLDRYVRPRLNFLTEGTLMNRFNGLMIMAGGVLLMFPLGLIPLSNTLPG
IAILLLSVGIIQRDGLMVAGGYLFLVATTIYFAVLGYAAFAAGQGLSHFFVS
>Mature_211_residues
AVEFGDTQRSLSETLTGMIAAIRGNTITLRQLMIEIGEQGFLLLCALLTLPFLIPVSIPGVSTVFGAAIILISLAITLNR
LPWLPKRILDREIETEKLVPTLRKGAALVSKLDRYVRPRLNFLTEGTLMNRFNGLMIMAGGVLLMFPLGLIPLSNTLPGI
AILLLSVGIIQRDGLMVAGGYLFLVATTIYFAVLGYAAFAAGQGLSHFFVS

Specific function: Required for nodule invasion. Mutations in this gene lead to sensitivity to alkaline conditions which prevents nodule invasion [H]

COG id: COG3932

COG function: function code R; Uncharacterized ABC-type transport system, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To Synechocystis PCC 6803 slr1875 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010331 [H]

Pfam domain/function: PF06055 ExoD [H]

EC number: NA

Molecular weight: Translated: 22920; Mature: 22789

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVEFGDTQRSLSETLTGMIAAIRGNTITLRQLMIEIGEQGFLLLCALLTLPFLIPVSIP
CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
GVSTVFGAAIILISLAITLNRLPWLPKRILDREIETEKLVPTLRKGAALVSKLDRYVRPR
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
LNFLTEGTLMNRFNGLMIMAGGVLLMFPLGLIPLSNTLPGIAILLLSVGIIQRDGLMVAG
HHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEC
GYLFLVATTIYFAVLGYAAFAAGQGLSHFFVS
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCC
>Mature Secondary Structure 
AVEFGDTQRSLSETLTGMIAAIRGNTITLRQLMIEIGEQGFLLLCALLTLPFLIPVSIP
CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
GVSTVFGAAIILISLAITLNRLPWLPKRILDREIETEKLVPTLRKGAALVSKLDRYVRPR
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
LNFLTEGTLMNRFNGLMIMAGGVLLMFPLGLIPLSNTLPGIAILLLSVGIIQRDGLMVAG
HHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEC
GYLFLVATTIYFAVLGYAAFAAGQGLSHFFVS
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1748284; 11481430 [H]