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The map label for this gene is ycaD [H]

Identifier: 150398656

GI number: 150398656

Start: 3678667

End: 3679932

Strand: Reverse

Name: ycaD [H]

Synonym: Smed_3470

Alternate gene names: 150398656

Gene position: 3679932-3678667 (Counterclockwise)

Preceding gene: 150398659

Following gene: 150398655

Centisome position: 97.3

GC content: 64.53

Gene sequence:

>1266_bases
GTGGATAGATCGGGTTCGTCGCTGCTGTCGATCGCGAGCATCGTCGCCTCGATGACGTCTGTCGCGGTCGGAAACGGCAT
GATGCTCGCCTATGTACCCTTCGTTTTGACGCGTTCGACGGCGCCGGACTGGGTTGCGGGCGCTGCGGTGACGGCGATTG
CCTTCGGCAGCCTGATCGGCTGTCTCATGGGTGGCTCGCTCATTCGCCGCGTCGGCCATGCCCGGGCGTTTTCCTGCTCC
ATGGCGCTCGTCATACTGGCGGCGCTGACGATCAGCCTCGGCGTTCATCCGCTGCTCTGGGTGGTTGCACGCGGGCTCTA
CGGCATTGCCGCCAGCATGAATTTCATCATCACACAAAGCTGGCTGAACCATGTCAGCGAGAACCACCGGCGCGGCCGGG
CGATGGCGCTCTTCTACATGGCCTACGTCATCGGCCTCGGCGCCGGCGCCTGGCTCTTCGGTCAGATCCCGTCCGAGGGC
AATCTCGCGCCCGTCATCACGATCTTCTTCACCGCGCTCGCCATTCTGCCGATTGGCCTGACGCGGCTGCCGACCCCGCC
CGCCCCCGCCAGGGTCAGCATTGATATTCCGATGGTCTGGCGCATTTCCCCGGTCGCCTTCGTCGGCGTGCTTGCGTCCG
GCGGCCTCTCCATGCTGGTACAGGGCTTCACGCCCATCTATGCGGCCGCCAACTCGGTCAGCCAGAAAGACGTGGCGGCC
TTGATGTTCGTGATGCAGTTCGGCCTGCTCTTCATTCAGTATCCGCTGGGCGCCCTCTCCGACCGCACCGACCGGCGGAT
CGTCATGGTCGTCACCTGTGCGCTCGTCATCGCGGCGGGCTTTGCTGCGCTCGCCGTCTCCTTCGACAACCTCATCCTGC
TCATGCTGGTTTTCGCGATCTTCGCCGGGGCAGTCGAGACGGTCTATTCGATTGCCAATGCGCATGCCAACGATCGCACC
GAGCCGGCGGATTTCGTGCCGCTCGCCAGCACCATGCTGATCGCCTGGTCGGCGTCGGCGACGCTGGTGCCGATGCTCGT
GACACTGCTGACGCCGGCCTTCGGTGAGCGCACTTTCATCTATGCGACGATGACGGTGGCGCTCCTCTATGCGCTGTTCG
TGCTCGTTCGCCTCCTGTCGCGCGAACGCGTCCCGCCCGAACTGTGCGAATCCTTTGAGTTCAAAAGCGCGCAGGTGCCG
AACGCCGCAGCTCTTGGCGAGACCGAGGCACACGCGGAATGCCCGCCCCGGCGCCCGGATTTATAG

Upstream 100 bases:

>100_bases
GGTTTCCTGATCTAGGGTTTGGTTTCTACGCCGGTTCCCCCAAAGACATTAAGCCTCAATAATTTAGATCAGCCTTATGC
GGAGCGTCCGGAGGGCACAG

Downstream 100 bases:

>100_bases
TGAATGAAGCCTTCATTTCCCGCTTTGCGCCGCCTGATCGCGCTGCTATATGCGGCCCATGAGCACATCATCCTCAAAGA
CGCCTCTGTCGCACATCCGC

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 421

Protein sequence:

>421_residues
MDRSGSSLLSIASIVASMTSVAVGNGMMLAYVPFVLTRSTAPDWVAGAAVTAIAFGSLIGCLMGGSLIRRVGHARAFSCS
MALVILAALTISLGVHPLLWVVARGLYGIAASMNFIITQSWLNHVSENHRRGRAMALFYMAYVIGLGAGAWLFGQIPSEG
NLAPVITIFFTALAILPIGLTRLPTPPAPARVSIDIPMVWRISPVAFVGVLASGGLSMLVQGFTPIYAAANSVSQKDVAA
LMFVMQFGLLFIQYPLGALSDRTDRRIVMVVTCALVIAAGFAALAVSFDNLILLMLVFAIFAGAVETVYSIANAHANDRT
EPADFVPLASTMLIAWSASATLVPMLVTLLTPAFGERTFIYATMTVALLYALFVLVRLLSRERVPPELCESFEFKSAQVP
NAAALGETEAHAECPPRRPDL

Sequences:

>Translated_421_residues
MDRSGSSLLSIASIVASMTSVAVGNGMMLAYVPFVLTRSTAPDWVAGAAVTAIAFGSLIGCLMGGSLIRRVGHARAFSCS
MALVILAALTISLGVHPLLWVVARGLYGIAASMNFIITQSWLNHVSENHRRGRAMALFYMAYVIGLGAGAWLFGQIPSEG
NLAPVITIFFTALAILPIGLTRLPTPPAPARVSIDIPMVWRISPVAFVGVLASGGLSMLVQGFTPIYAAANSVSQKDVAA
LMFVMQFGLLFIQYPLGALSDRTDRRIVMVVTCALVIAAGFAALAVSFDNLILLMLVFAIFAGAVETVYSIANAHANDRT
EPADFVPLASTMLIAWSASATLVPMLVTLLTPAFGERTFIYATMTVALLYALFVLVRLLSRERVPPELCESFEFKSAQVP
NAAALGETEAHAECPPRRPDL
>Mature_421_residues
MDRSGSSLLSIASIVASMTSVAVGNGMMLAYVPFVLTRSTAPDWVAGAAVTAIAFGSLIGCLMGGSLIRRVGHARAFSCS
MALVILAALTISLGVHPLLWVVARGLYGIAASMNFIITQSWLNHVSENHRRGRAMALFYMAYVIGLGAGAWLFGQIPSEG
NLAPVITIFFTALAILPIGLTRLPTPPAPARVSIDIPMVWRISPVAFVGVLASGGLSMLVQGFTPIYAAANSVSQKDVAA
LMFVMQFGLLFIQYPLGALSDRTDRRIVMVVTCALVIAAGFAALAVSFDNLILLMLVFAIFAGAVETVYSIANAHANDRT
EPADFVPLASTMLIAWSASATLVPMLVTLLTPAFGERTFIYATMTVALLYALFVLVRLLSRERVPPELCESFEFKSAQVP
NAAALGETEAHAECPPRRPDL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=349, Percent_Identity=25.7879656160458, Blast_Score=93, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 44713; Mature: 44713

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRSGSSLLSIASIVASMTSVAVGNGMMLAYVPFVLTRSTAPDWVAGAAVTAIAFGSLIG
CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
CLMGGSLIRRVGHARAFSCSMALVILAALTISLGVHPLLWVVARGLYGIAASMNFIITQS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
WLNHVSENHRRGRAMALFYMAYVIGLGAGAWLFGQIPSEGNLAPVITIFFTALAILPIGL
HHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHEEECCCCCCCCHHHHHHHHHHHHHHHCCH
TRLPTPPAPARVSIDIPMVWRISPVAFVGVLASGGLSMLVQGFTPIYAAANSVSQKDVAA
HCCCCCCCCCEEEECCCEEEEECHHHHHHHHHHCCHHHHHHCCHHHHHHHCCCCHHHHHH
LMFVMQFGLLFIQYPLGALSDRTDRRIVMVVTCALVIAAGFAALAVSFDNLILLMLVFAI
HHHHHHHHHHHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FAGAVETVYSIANAHANDRTEPADFVPLASTMLIAWSASATLVPMLVTLLTPAFGERTFI
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHH
YATMTVALLYALFVLVRLLSRERVPPELCESFEFKSAQVPNAAALGETEAHAECPPRRPD
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCCCC
L
C
>Mature Secondary Structure
MDRSGSSLLSIASIVASMTSVAVGNGMMLAYVPFVLTRSTAPDWVAGAAVTAIAFGSLIG
CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
CLMGGSLIRRVGHARAFSCSMALVILAALTISLGVHPLLWVVARGLYGIAASMNFIITQS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
WLNHVSENHRRGRAMALFYMAYVIGLGAGAWLFGQIPSEGNLAPVITIFFTALAILPIGL
HHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHEEECCCCCCCCHHHHHHHHHHHHHHHCCH
TRLPTPPAPARVSIDIPMVWRISPVAFVGVLASGGLSMLVQGFTPIYAAANSVSQKDVAA
HCCCCCCCCCEEEECCCEEEEECHHHHHHHHHHCCHHHHHHCCHHHHHHHCCCCHHHHHH
LMFVMQFGLLFIQYPLGALSDRTDRRIVMVVTCALVIAAGFAALAVSFDNLILLMLVFAI
HHHHHHHHHHHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FAGAVETVYSIANAHANDRTEPADFVPLASTMLIAWSASATLVPMLVTLLTPAFGERTFI
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHH
YATMTVALLYALFVLVRLLSRERVPPELCESFEFKSAQVPNAAALGETEAHAECPPRRPD
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCCCC
L
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA