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The map label for this gene is rnk [H]

Identifier: 150398653

GI number: 150398653

Start: 3675192

End: 3675599

Strand: Reverse

Name: rnk [H]

Synonym: Smed_3467

Alternate gene names: 150398653

Gene position: 3675599-3675192 (Counterclockwise)

Preceding gene: 150398655

Following gene: 150398651

Centisome position: 97.19

GC content: 62.01

Gene sequence:

>408_bases
ATGGCGGACAAGATAACCCGCAAGAAGCTTCCCTCGATCGTCATCAATGCCGATGACCATGCACGCCTGACGGCGATCGC
CTCTTCGGCGCTCGATCGTATTCCGGAAGTAGCGGAGGCACTGCTTCTGGAACTCGACCGCGCGCGCATCGCCGCGCCTG
GCAAGCTGCCCAAGGACAGCGTACAAATGGGCTCGACCGTCGCCTTCCACGCCGATAACGGTTTTGCGAAGGAAGTGAGG
CTCGTCTATCCGGGGGAGGCAGACATCGAAGCCGGAAAAATCTCCGTGCTGACGCCGATCGGGGCCGCGCTTATCGGCCT
TTCCGTCGGACAGTCGATCGACTGGTCGGACCGGGCGGGAAAGATACACCGCATGACGATCCGGAGCGTGGTGCCGGCAA
CGGGCTAA

Upstream 100 bases:

>100_bases
ATGGCCCAAACCCTCCGTCATCCGGGCAGCGAGCGCAAATCATCCTCGACAATTCACTTACGGCGCAGGCAGTGCGGTGC
GCCCAGGCACAGGTATCACC

Downstream 100 bases:

>100_bases
AGGCGTCCCCCCTCGGCCGGAAACTGCAACGTCAACGGCCTGGATCGTTTCACTGTTCTACGAACGGTGAAACGATCCAG
AGGCCGTCTCAGAACTGCCG

Product: nucleoside diphosphate kinase regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 134

Protein sequence:

>135_residues
MADKITRKKLPSIVINADDHARLTAIASSALDRIPEVAEALLLELDRARIAAPGKLPKDSVQMGSTVAFHADNGFAKEVR
LVYPGEADIEAGKISVLTPIGAALIGLSVGQSIDWSDRAGKIHRMTIRSVVPATG

Sequences:

>Translated_135_residues
MADKITRKKLPSIVINADDHARLTAIASSALDRIPEVAEALLLELDRARIAAPGKLPKDSVQMGSTVAFHADNGFAKEVR
LVYPGEADIEAGKISVLTPIGAALIGLSVGQSIDWSDRAGKIHRMTIRSVVPATG
>Mature_134_residues
ADKITRKKLPSIVINADDHARLTAIASSALDRIPEVAEALLLELDRARIAAPGKLPKDSVQMGSTVAFHADNGFAKEVRL
VYPGEADIEAGKISVLTPIGAALIGLSVGQSIDWSDRAGKIHRMTIRSVVPATG

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=108, Percent_Identity=39.8148148148148, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 14278; Mature: 14146

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADKITRKKLPSIVINADDHARLTAIASSALDRIPEVAEALLLELDRARIAAPGKLPKDS
CCCCCCHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
VQMGSTVAFHADNGFAKEVRLVYPGEADIEAGKISVLTPIGAALIGLSVGQSIDWSDRAG
HCCCCEEEEECCCCCCEEEEEEECCCCCCCCCEEEEECHHHHHHHHHHCCCCCCCCCCCC
KIHRMTIRSVVPATG
CEEEEEHHHHCCCCC
>Mature Secondary Structure 
ADKITRKKLPSIVINADDHARLTAIASSALDRIPEVAEALLLELDRARIAAPGKLPKDS
CCCCCHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
VQMGSTVAFHADNGFAKEVRLVYPGEADIEAGKISVLTPIGAALIGLSVGQSIDWSDRAG
HCCCCEEEEECCCCCCEEEEEEECCCCCCCCCEEEEECHHHHHHHHHHCCCCCCCCCCCC
KIHRMTIRSVVPATG
CEEEEEHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]