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The map label for this gene is cycM [H]

Identifier: 150398612

GI number: 150398612

Start: 3631742

End: 3632533

Strand: Reverse

Name: cycM [H]

Synonym: Smed_3426

Alternate gene names: 150398612

Gene position: 3632533-3631742 (Counterclockwise)

Preceding gene: 150398616

Following gene: 150398611

Centisome position: 96.05

GC content: 66.04

Gene sequence:

>792_bases
ATGAATCCATATGTGAACATGGGTGTGGGTGCCTTGTTGGGTACGGTCTTCGTACTGATGACCGTCTCAATCGCGTCGGA
AGGCATTTTCCATTCCGAAGCTCCCGAGAAGGAAGGCTTCGCGATCGTCGCGGAGGAAACGGCCGGCGAAGCCGGTGCCG
CCGGCGGCGAAGAAGCGAAATCCGAGCCGATCGGGCCTCTGCTCGCCAGCGCCGATGCACCCGCCGGCGAGGCCGTGTTC
AAGAAATGCGCAAGCTGTCACACCGTGGAGAAGGGCGGACCGAACAAGGTCGGCCCTAATCTCTGGGACATCGTCAATCG
CCCGATCGCCTCGCATGAGGGCTTCAGCTATTCCGCCGGCATGCAGACCTTTTCCGAAGGCGGCAAGGTCGTGTGGGACT
ACGATCACCTGAGCTACTTCCTCGAAGCGCCGAAAAAGCACGTGCCGGGCACGGCCATGGGCTTTGCCGGTCTCAAGAAG
ACCGACGAGCGCGCCAACTTGATCGCCTGGCTGCGTGAGCATTCGGACAACCCCGCACCGCTTCCCGAAGCCGGCGCAGG
CTCTACCGAGGCGGCACCCGCCGAAGGTCAGGCGCCCGCCGCCGCCGAAGGCAACGCGGCCCCTGCTCCCGCTGAAGGCA
CTTCCGCTCCAGCTGACACAGCGGCTCCGCCTCCGGCCGAAGGCGGCGCAGCGCCAGCACCTGCTGCCGGCAGCGCAGCT
CCGGCACCTGCTGTCGGCGAAACGGCTCCCGCGGGTCAGACCGGCGCTCCAGCGCCTGCGCCGGCGAACTGA

Upstream 100 bases:

>100_bases
TAATCTCTGTTGCAACGCAGAGCCAAAAGACATAGGTTCCGCGCGATTTCAAGATGGGCCGGTTTTTTGTTTGCACCGGT
GGCAAAGGGAGCGTTTGCAG

Downstream 100 bases:

>100_bases
TTTGCCGCCAGTATACAGGCATCTGCCGATCCTCCCGAAAACCCGGTCGAACGATCGGGTTTTTCATATTCCGCAGTTGT
GATGAGCTCGGCCGCGTCAT

Product: cytochrome c class I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MNPYVNMGVGALLGTVFVLMTVSIASEGIFHSEAPEKEGFAIVAEETAGEAGAAGGEEAKSEPIGPLLASADAPAGEAVF
KKCASCHTVEKGGPNKVGPNLWDIVNRPIASHEGFSYSAGMQTFSEGGKVVWDYDHLSYFLEAPKKHVPGTAMGFAGLKK
TDERANLIAWLREHSDNPAPLPEAGAGSTEAAPAEGQAPAAAEGNAAPAPAEGTSAPADTAAPPPAEGGAAPAPAAGSAA
PAPAVGETAPAGQTGAPAPAPAN

Sequences:

>Translated_263_residues
MNPYVNMGVGALLGTVFVLMTVSIASEGIFHSEAPEKEGFAIVAEETAGEAGAAGGEEAKSEPIGPLLASADAPAGEAVF
KKCASCHTVEKGGPNKVGPNLWDIVNRPIASHEGFSYSAGMQTFSEGGKVVWDYDHLSYFLEAPKKHVPGTAMGFAGLKK
TDERANLIAWLREHSDNPAPLPEAGAGSTEAAPAEGQAPAAAEGNAAPAPAEGTSAPADTAAPPPAEGGAAPAPAAGSAA
PAPAVGETAPAGQTGAPAPAPAN
>Mature_263_residues
MNPYVNMGVGALLGTVFVLMTVSIASEGIFHSEAPEKEGFAIVAEETAGEAGAAGGEEAKSEPIGPLLASADAPAGEAVF
KKCASCHTVEKGGPNKVGPNLWDIVNRPIASHEGFSYSAGMQTFSEGGKVVWDYDHLSYFLEAPKKHVPGTAMGFAGLKK
TDERANLIAWLREHSDNPAPLPEAGAGSTEAAPAEGQAPAAAEGNAAPAPAEGTSAPADTAAPPPAEGGAAPAPAAGSAA
PAPAVGETAPAGQTGAPAPAPAN

Specific function: May be involved in electron transfer from bc1 complex to aa3 [H]

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=103, Percent_Identity=44.6601941747573, Blast_Score=97, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17566554, Length=101, Percent_Identity=42.5742574257426, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17539604, Length=101, Percent_Identity=41.5841584158416, Blast_Score=80, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6322508, Length=103, Percent_Identity=46.6019417475728, Blast_Score=97, Evalue=3e-21,
Organism=Saccharomyces cerevisiae, GI6320796, Length=100, Percent_Identity=46, Blast_Score=96, Evalue=7e-21,
Organism=Drosophila melanogaster, GI17137204, Length=109, Percent_Identity=44.954128440367, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI17137228, Length=102, Percent_Identity=45.0980392156863, Blast_Score=96, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 26037; Mature: 26037

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPYVNMGVGALLGTVFVLMTVSIASEGIFHSEAPEKEGFAIVAEETAGEAGAAGGEEAK
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHH
SEPIGPLLASADAPAGEAVFKKCASCHTVEKGGPNKVGPNLWDIVNRPIASHEGFSYSAG
CCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHH
MQTFSEGGKVVWDYDHLSYFLEAPKKHVPGTAMGFAGLKKTDERANLIAWLREHSDNPAP
HHHHHCCCCEEEEHHHHHHHHHCCHHHCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCCC
LPEAGAGSTEAAPAEGQAPAAAEGNAAPAPAEGTSAPADTAAPPPAEGGAAPAPAAGSAA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PAPAVGETAPAGQTGAPAPAPAN
CCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNPYVNMGVGALLGTVFVLMTVSIASEGIFHSEAPEKEGFAIVAEETAGEAGAAGGEEAK
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHH
SEPIGPLLASADAPAGEAVFKKCASCHTVEKGGPNKVGPNLWDIVNRPIASHEGFSYSAG
CCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHH
MQTFSEGGKVVWDYDHLSYFLEAPKKHVPGTAMGFAGLKKTDERANLIAWLREHSDNPAP
HHHHHCCCCEEEEHHHHHHHHHCCHHHCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCCC
LPEAGAGSTEAAPAEGQAPAAAEGNAAPAPAEGTSAPADTAAPPPAEGGAAPAPAAGSAA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PAPAVGETAPAGQTGAPAPAPAN
CCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194 [H]