Click here to switch to the map view.

The map label for this gene is deoB [H]

Identifier: 150398534

GI number: 150398534

Start: 3545188

End: 3546408

Strand: Reverse

Name: deoB [H]

Synonym: Smed_3345

Alternate gene names: 150398534

Gene position: 3546408-3545188 (Counterclockwise)

Preceding gene: 150398535

Following gene: 150398533

Centisome position: 93.77

GC content: 65.68

Gene sequence:

>1221_bases
ATGGCGCGCGCCTTCCTTTTCGTCCTCGATTCCTTCGGCATCGGCAATGCGCCGGACGCGGGGGCTTTCGGCGATCTCGG
CGCCGATACGCTCGGACACATAGCGGAATTCTGCGCGGCCGGGGCCGCCGACCGGGCGGGCCTCAGGGAAGGGCCGCTCA
ATCTGCCAAACATGTCAGCGCTGGGCCTCATGCATGCGGCGCGGCTGGCGACCGGTCGGCTGCCCGCCGGCATGGCGCTG
CCGGAGCGCGTTTACGGCGTCTACGGCGCCGCCAGTGAAGTCTCGCGCGGCAAGGACACGCCGTCCGGCCATTGGGAAAT
CGCCGGCACGCCGGTGACCTTCGACTGGGGCTATTTCCCCGCGGACGGCGACGCCTTCCCTCCCGAACTCGTCGAGGCGA
TCTGTCGCGAGGGCGACGTGCCCGGCATTCTCGGCAATTGCCATGCCTCGGGCACCGATATCATCGCGCGTCTCGGCGAA
GAGCATATGCGGACCGGCAAGCCGATCTGCTATACCTCGTCGGACTCGGTCTTTCAGATTGCCGCACACGAACAGACCTT
CGGTCTGGAGCGTCTGCAGGACCTTTGCGCGGTCGTCCGCCGGCTCGTCGACGAGTACAATATCGGCCGTGTGATCGCTC
GCCCGTTCGTCGGCAGCGATCCGGGCAGCTTCACGCGCACCGGCAATCGGCGGGATTATTCGGTGCTGCCGCCGGCACCG
ACCGTTCTCGACCGACTGAAGGAGGCCGGGCGAACAGTGCACGCAATCGGCAAGATCGCCGACATCTTCGCGCATCAGGG
TGTAACCAGGCTTACCAAGGCCAACGGCAACATGGCTCTGTTCGACGCAAGCCTGGCGGCGATCGACGAGGCCGAGGACG
GCGCGCTCATCTTCACCAATTTCGTCGATTTCGATATGCTCTACGGTCATCGCCGCGACGTGGCCGGCTATGCCGCAGCG
CTCGAAGCCTTCGATGCACGCCTTCCCGATCTCGACCGCCGCCTGAAGCCCGGCGACATGGTCATCCTGACTGCCGACCA
TGGCTGCGACCCGACCTGGCGCGGCACCGACCACACCCGCGAGCGCGTGCCCGTTCTGATGTTCGGACCGACGCTTCGGA
GCCGCTCCGTCGGTATTGTCGGGAGCTTCGCACATATCGGTGAAACCGTTGCAAGTCATCTCGGAATTGACCCCGGCCCG
CATGGGAGGAGCCTCATTTGA

Upstream 100 bases:

>100_bases
GCGCGCTATTCCTGCCGGATTGTGCGGCGACGGCCGCGAAAATCTTAATAGCGCCGGCTCGCCGTTCCCCACGCGCGCGC
CGGGTCGGACAAGGTGTTTC

Downstream 100 bases:

>100_bases
CCGCTCATCTGAAGAAGGCAGAGCTGCACTGCCACATCGAAGGCGCGACGCCGCCGGAACTGGCGGTGAGACAGGCTCGG
AAATACGGCGTCGATACCGG

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase [H]

Number of amino acids: Translated: 406; Mature: 405

Protein sequence:

>406_residues
MARAFLFVLDSFGIGNAPDAGAFGDLGADTLGHIAEFCAAGAADRAGLREGPLNLPNMSALGLMHAARLATGRLPAGMAL
PERVYGVYGAASEVSRGKDTPSGHWEIAGTPVTFDWGYFPADGDAFPPELVEAICREGDVPGILGNCHASGTDIIARLGE
EHMRTGKPICYTSSDSVFQIAAHEQTFGLERLQDLCAVVRRLVDEYNIGRVIARPFVGSDPGSFTRTGNRRDYSVLPPAP
TVLDRLKEAGRTVHAIGKIADIFAHQGVTRLTKANGNMALFDASLAAIDEAEDGALIFTNFVDFDMLYGHRRDVAGYAAA
LEAFDARLPDLDRRLKPGDMVILTADHGCDPTWRGTDHTRERVPVLMFGPTLRSRSVGIVGSFAHIGETVASHLGIDPGP
HGRSLI

Sequences:

>Translated_406_residues
MARAFLFVLDSFGIGNAPDAGAFGDLGADTLGHIAEFCAAGAADRAGLREGPLNLPNMSALGLMHAARLATGRLPAGMAL
PERVYGVYGAASEVSRGKDTPSGHWEIAGTPVTFDWGYFPADGDAFPPELVEAICREGDVPGILGNCHASGTDIIARLGE
EHMRTGKPICYTSSDSVFQIAAHEQTFGLERLQDLCAVVRRLVDEYNIGRVIARPFVGSDPGSFTRTGNRRDYSVLPPAP
TVLDRLKEAGRTVHAIGKIADIFAHQGVTRLTKANGNMALFDASLAAIDEAEDGALIFTNFVDFDMLYGHRRDVAGYAAA
LEAFDARLPDLDRRLKPGDMVILTADHGCDPTWRGTDHTRERVPVLMFGPTLRSRSVGIVGSFAHIGETVASHLGIDPGP
HGRSLI
>Mature_405_residues
ARAFLFVLDSFGIGNAPDAGAFGDLGADTLGHIAEFCAAGAADRAGLREGPLNLPNMSALGLMHAARLATGRLPAGMALP
ERVYGVYGAASEVSRGKDTPSGHWEIAGTPVTFDWGYFPADGDAFPPELVEAICREGDVPGILGNCHASGTDIIARLGEE
HMRTGKPICYTSSDSVFQIAAHEQTFGLERLQDLCAVVRRLVDEYNIGRVIARPFVGSDPGSFTRTGNRRDYSVLPPAPT
VLDRLKEAGRTVHAIGKIADIFAHQGVTRLTKANGNMALFDASLAAIDEAEDGALIFTNFVDFDMLYGHRRDVAGYAAAL
EAFDARLPDLDRRLKPGDMVILTADHGCDPTWRGTDHTRERVPVLMFGPTLRSRSVGIVGSFAHIGETVASHLGIDPGPH
GRSLI

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose [H]

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family [H]

Homologues:

Organism=Escherichia coli, GI1790843, Length=409, Percent_Identity=57.7017114914425, Blast_Score=476, Evalue=1e-135,
Organism=Escherichia coli, GI1789781, Length=431, Percent_Identity=30.6264501160093, Blast_Score=108, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme [H]

EC number: =5.4.2.7 [H]

Molecular weight: Translated: 43346; Mature: 43214

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARAFLFVLDSFGIGNAPDAGAFGDLGADTLGHIAEFCAAGAADRAGLREGPLNLPNMSA
CCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
LGLMHAARLATGRLPAGMALPERVYGVYGAASEVSRGKDTPSGHWEIAGTPVTFDWGYFP
HHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHCCCCCCCCCEEEECCEEEECCCEEC
ADGDAFPPELVEAICREGDVPGILGNCHASGTDIIARLGEEHMRTGKPICYTSSDSVFQI
CCCCCCCHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEE
AAHEQTFGLERLQDLCAVVRRLVDEYNIGRVIARPFVGSDPGSFTRTGNRRDYSVLPPAP
ECCHHHHCHHHHHHHHHHHHHHHHHCCCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCH
TVLDRLKEAGRTVHAIGKIADIFAHQGVTRLTKANGNMALFDASLAAIDEAEDGALIFTN
HHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEECHHHHHCCCCCCEEEEEE
FVDFDMLYGHRRDVAGYAAALEAFDARLPDLDRRLKPGDMVILTADHGCDPTWRGTDHTR
HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHCCCCCCEEEEEECCCCCCCCCCCCCHH
ERVPVLMFGPTLRSRSVGIVGSFAHIGETVASHLGIDPGPHGRSLI
HCCCEEEECCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
ARAFLFVLDSFGIGNAPDAGAFGDLGADTLGHIAEFCAAGAADRAGLREGPLNLPNMSA
CCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
LGLMHAARLATGRLPAGMALPERVYGVYGAASEVSRGKDTPSGHWEIAGTPVTFDWGYFP
HHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHCCCCCCCCCEEEECCEEEECCCEEC
ADGDAFPPELVEAICREGDVPGILGNCHASGTDIIARLGEEHMRTGKPICYTSSDSVFQI
CCCCCCCHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEE
AAHEQTFGLERLQDLCAVVRRLVDEYNIGRVIARPFVGSDPGSFTRTGNRRDYSVLPPAP
ECCHHHHCHHHHHHHHHHHHHHHHHCCCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCH
TVLDRLKEAGRTVHAIGKIADIFAHQGVTRLTKANGNMALFDASLAAIDEAEDGALIFTN
HHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEECHHHHHCCCCCCEEEEEE
FVDFDMLYGHRRDVAGYAAALEAFDARLPDLDRRLKPGDMVILTADHGCDPTWRGTDHTR
HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHCCCCCCEEEEEECCCCCCCCCCCCCHH
ERVPVLMFGPTLRSRSVGIVGSFAHIGETVASHLGIDPGPHGRSLI
HCCCEEEECCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]