| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
Click here to switch to the map view.
The map label for this gene is add [H]
Identifier: 150398533
GI number: 150398533
Start: 3544217
End: 3545191
Strand: Reverse
Name: add [H]
Synonym: Smed_3344
Alternate gene names: 150398533
Gene position: 3545191-3544217 (Counterclockwise)
Preceding gene: 150398534
Following gene: 150398532
Centisome position: 93.74
GC content: 64.21
Gene sequence:
>975_bases TTGACCGCTCATCTGAAGAAGGCAGAGCTGCACTGCCACATCGAAGGCGCGACGCCGCCGGAACTGGCGGTGAGACAGGC TCGGAAATACGGCGTCGATACCGGCACAATCATCCGGGACGGTGCCTATGTCTGGGAGGATTTCACCAGCTTCGTGAAGT GCTACGATGCCGTGGCTTCGCTGTTTCGCACCGAGGGGGATTATGCGCTTCTCGCCGAGGCCTATCTGACGGAGCTTGCA GAAGCCGGCACGATCTATAGCGAGATCATCGTCTCGCCCGACCACGGCAACACGGTCGGCCTCGGGGCAGATGCATATCT CGAGGGGCTGGCCGCCGGCATGGAAGCCGCGAAGGCCAGAAAGGGGATCGAATCCCGCATGCTGATCACCGGCATCCGGC ACCTCGGCCCGGAAGCAGTCGTCAGGACCGCGGAATATGCAGCCTCGCATCGGCATCCGCTCGTCACCGGTTTCAACCTG GCCGGCGAGGAGCGCATGCATAGCGTGGCTGAATTTTCCCGTGCCTTCGACATCGTCCGCGATGCCGGTCTCGGCCTGAC CATTCACGCCGGCGAGCTTTCCGGCGCCTTCAGCGTGCGCGACGCTCTGGACCACGTCCGCCCCGCCCGGATCAGTCACG GTGTCCGGGCGATCGAGGACACGGACCTCGTCAGGCGGCTTGCCGATGAGGGCGTGGTGCTCGAAGTCTGCCCCGGCTCG AATATCGCGTTGAAGGTGTTTCCGGATTTCCCCTCGCATCCGCTGCGGCGGCTTTACGACGCCGGCGTCCGCGTGACGCT CAACTCCGACGATCCCCCCTTCTTCCATACCTCGCTGGCGCAGGAATACGAGATCGCCGCCCACGCCATGGGATTCTCCG ACGGCGAGATCGACCGGATGACGAGAACGGCGCTCGAAGCCGCCTTCGTGGACGAGCCGACGCGAGAGAGGCTGCTGGCT GCGTTGCACATCTGA
Upstream 100 bases:
>100_bases GGAGCCGCTCCGTCGGTATTGTCGGGAGCTTCGCACATATCGGTGAAACCGTTGCAAGTCATCTCGGAATTGACCCCGGC CCGCATGGGAGGAGCCTCAT
Downstream 100 bases:
>100_bases TTGCCGGGCGATTGGCCTCGCCCTCGCCGCTCAAAACGGAAGAAGGTGTCGGCGGGGGAATAGGAGCGCCATCTGCCATC AACTTCCACCTACACCCTTG
Product: adenosine deaminase
Products: NA
Alternate protein names: Adenosine aminohydrolase [H]
Number of amino acids: Translated: 324; Mature: 323
Protein sequence:
>324_residues MTAHLKKAELHCHIEGATPPELAVRQARKYGVDTGTIIRDGAYVWEDFTSFVKCYDAVASLFRTEGDYALLAEAYLTELA EAGTIYSEIIVSPDHGNTVGLGADAYLEGLAAGMEAAKARKGIESRMLITGIRHLGPEAVVRTAEYAASHRHPLVTGFNL AGEERMHSVAEFSRAFDIVRDAGLGLTIHAGELSGAFSVRDALDHVRPARISHGVRAIEDTDLVRRLADEGVVLEVCPGS NIALKVFPDFPSHPLRRLYDAGVRVTLNSDDPPFFHTSLAQEYEIAAHAMGFSDGEIDRMTRTALEAAFVDEPTRERLLA ALHI
Sequences:
>Translated_324_residues MTAHLKKAELHCHIEGATPPELAVRQARKYGVDTGTIIRDGAYVWEDFTSFVKCYDAVASLFRTEGDYALLAEAYLTELA EAGTIYSEIIVSPDHGNTVGLGADAYLEGLAAGMEAAKARKGIESRMLITGIRHLGPEAVVRTAEYAASHRHPLVTGFNL AGEERMHSVAEFSRAFDIVRDAGLGLTIHAGELSGAFSVRDALDHVRPARISHGVRAIEDTDLVRRLADEGVVLEVCPGS NIALKVFPDFPSHPLRRLYDAGVRVTLNSDDPPFFHTSLAQEYEIAAHAMGFSDGEIDRMTRTALEAAFVDEPTRERLLA ALHI >Mature_323_residues TAHLKKAELHCHIEGATPPELAVRQARKYGVDTGTIIRDGAYVWEDFTSFVKCYDAVASLFRTEGDYALLAEAYLTELAE AGTIYSEIIVSPDHGNTVGLGADAYLEGLAAGMEAAKARKGIESRMLITGIRHLGPEAVVRTAEYAASHRHPLVTGFNLA GEERMHSVAEFSRAFDIVRDAGLGLTIHAGELSGAFSVRDALDHVRPARISHGVRAIEDTDLVRRLADEGVVLEVCPGSN IALKVFPDFPSHPLRRLYDAGVRVTLNSDDPPFFHTSLAQEYEIAAHAMGFSDGEIDRMTRTALEAAFVDEPTRERLLAA LHI
Specific function: Unknown
COG id: COG1816
COG function: function code F; Adenosine deaminase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the adenosine and AMP deaminases family [H]
Homologues:
Organism=Homo sapiens, GI47078295, Length=341, Percent_Identity=24.633431085044, Blast_Score=114, Evalue=1e-25, Organism=Escherichia coli, GI1787910, Length=322, Percent_Identity=27.3291925465839, Blast_Score=117, Evalue=1e-27, Organism=Caenorhabditis elegans, GI32565969, Length=213, Percent_Identity=24.4131455399061, Blast_Score=69, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17538512, Length=213, Percent_Identity=24.4131455399061, Blast_Score=68, Evalue=5e-12, Organism=Saccharomyces cerevisiae, GI6324188, Length=329, Percent_Identity=26.7477203647416, Blast_Score=129, Evalue=6e-31, Organism=Drosophila melanogaster, GI24645260, Length=321, Percent_Identity=25.2336448598131, Blast_Score=82, Evalue=6e-16, Organism=Drosophila melanogaster, GI45553183, Length=286, Percent_Identity=27.2727272727273, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI17737615, Length=286, Percent_Identity=27.2727272727273, Blast_Score=71, Evalue=8e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001365 - InterPro: IPR006330 [H]
Pfam domain/function: PF00962 A_deaminase [H]
EC number: =3.5.4.4 [H]
Molecular weight: Translated: 35291; Mature: 35160
Theoretical pI: Translated: 5.38; Mature: 5.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAHLKKAELHCHIEGATPPELAVRQARKYGVDTGTIIRDGAYVWEDFTSFVKCYDAVAS CCCCCEECEEEEEECCCCCHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHH LFRTEGDYALLAEAYLTELAEAGTIYSEIIVSPDHGNTVGLGADAYLEGLAAGMEAAKAR HHHCCCCHHHHHHHHHHHHHHHCCHHHHEEECCCCCCEEECCHHHHHHHHHHHHHHHHHH KGIESRMLITGIRHLGPEAVVRTAEYAASHRHPLVTGFNLAGEERMHSVAEFSRAFDIVR HCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHH DAGLGLTIHAGELSGAFSVRDALDHVRPARISHGVRAIEDTDLVRRLADEGVVLEVCPGS HCCCCEEEECCCCCCCHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCC NIALKVFPDFPSHPLRRLYDAGVRVTLNSDDPPFFHTSLAQEYEIAAHAMGFSDGEIDRM CEEEEECCCCCCHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHH TRTALEAAFVDEPTRERLLAALHI HHHHHHHHHCCCHHHHHHHHHHCC >Mature Secondary Structure TAHLKKAELHCHIEGATPPELAVRQARKYGVDTGTIIRDGAYVWEDFTSFVKCYDAVAS CCCCEECEEEEEECCCCCHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHH LFRTEGDYALLAEAYLTELAEAGTIYSEIIVSPDHGNTVGLGADAYLEGLAAGMEAAKAR HHHCCCCHHHHHHHHHHHHHHHCCHHHHEEECCCCCCEEECCHHHHHHHHHHHHHHHHHH KGIESRMLITGIRHLGPEAVVRTAEYAASHRHPLVTGFNLAGEERMHSVAEFSRAFDIVR HCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHH DAGLGLTIHAGELSGAFSVRDALDHVRPARISHGVRAIEDTDLVRRLADEGVVLEVCPGS HCCCCEEEECCCCCCCHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCC NIALKVFPDFPSHPLRRLYDAGVRVTLNSDDPPFFHTSLAQEYEIAAHAMGFSDGEIDRM CEEEEECCCCCCHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHH TRTALEAAFVDEPTRERLLAALHI HHHHHHHHHCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11481430 [H]