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The map label for this gene is yesO [H]

Identifier: 150398518

GI number: 150398518

Start: 3526276

End: 3527562

Strand: Reverse

Name: yesO [H]

Synonym: Smed_3329

Alternate gene names: 150398518

Gene position: 3527562-3526276 (Counterclockwise)

Preceding gene: 150398532

Following gene: 150398517

Centisome position: 93.27

GC content: 64.57

Gene sequence:

>1287_bases
ATGACGCATAAAATCAGCAGGCGAAGTGTACTCGCGGGTGGGGCGGCACTTCTTTCGATGTCGGCGATGGCAAGGAGCGC
CCTTGCGCAGGAGGCGCGGCTGCGCGTGCTCTGGTGGGGCTCTCAGGCCCGGGCCGACCGGACCAACAAGGTCAACCAGC
TCTTCCAGGAGCAGAATGCGGGTGTCGCCATCAACGGCGAATTTCTCGGCTGGAGCGATTACTGGCCTCGGCTCGCGACG
CAGGTCGCCGGCCGTAACGCACCCGACATCATACAGATGGACTATCGCTACATCGTCGAATATGCCCGGCGCGGCGCGCT
CGCGCCGCTCGACGACTATCTCGGCTCCGTGCTCAAGGTCGAGGATTTCGACCAGGTGCAGATCAAGGGCGGCAGCGTCG
ACGGCAAGCTCTACGGCATCAGCCTCGGCGCCAACTCGGCAGCGATGATGGTCAACGCCGCCGCTTTCGAGGAAGCCGGA
GTCGACCTGCCGAGCCCATCCACCACCTGGGAAGAGATGGCAAAGATCGGCGCTGAGATCACCCAGGCGGGCAAGCGCAA
GGGGTTCTACGGCCTTTCCGATGGCAGTGCCGTCGAGCCGCTGCTCGAAAACTGGCTTCGCCAGCGCGGCAAGGCGCTCT
TCACCGCCGAAGGCAAGATCGGTTACGATGCCAATGATGCGGCAGAATGGTTTACCATGTGGCAGAACATGCGCGAGGCC
AAGGCGTGCGTTCCGCCGGACGTGCAGGCGCTCGACCAGTACACCGTGGAGACGAGCCCGCTGTCGCTCGGCAAGTCGGC
CGCCTCCTTTGCGCATTCCAACCAGTTCGTCGCCTATCAGGGCGTCAGCAAGGACAAGCTGGCGCTCCGCAGCCACCCGT
TGATCAGCAAGGATTCGAAGGGCGGCCATTACCGCAAGCCGTCGATGTTCTTCTCGGTCGCGGCTCAGACGAAGGACCCG
GAACTCGGCGCCAAATATGTCAACTTCTTCGTCAAGGATCCGAAGGCCGCAGAAATCCTCGGCGTCGAGCGCGGCGTACC
GGAATCGTCCGCCGTGCGCGAGGCTCTCGCGCCGACGCTCGACGAGCTCGGCCGCGCCATGCTCGACTATGTCTCCGGCC
TCGGTCCCCTTGCCGGCGAACTGCCGCCACCCCCGCCGAGCGGTGCCGGCGAGGCGGAATTCGCACTGCGCAACGTCGCC
GAACAGGTGGGCTTCGGTCAGCTCGATGCCAAGCAGGGCGGCGAGACGCTGGTGAACGAAGTCAGCCAAATTCTCGCGCG
GGGTTAG

Upstream 100 bases:

>100_bases
ACTGCTTGACAGGATCATTGCTTGTCCATAACTTGTAACCAAATAGTTATTTGTTGCAAGCCGGAACGTTGTGGAGGCGT
TCCGAAGGGAGGAGGAACAG

Downstream 100 bases:

>100_bases
GAGGATGGCGGCCGTGCAGGACACCGCTGTCACCGTCGGCACGGGCGCTCCTTCGCGCCCGGCCGCACAGGGCCGCCTGG
CAAGAATCTGGGCCAGGCAC

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 427

Protein sequence:

>428_residues
MTHKISRRSVLAGGAALLSMSAMARSALAQEARLRVLWWGSQARADRTNKVNQLFQEQNAGVAINGEFLGWSDYWPRLAT
QVAGRNAPDIIQMDYRYIVEYARRGALAPLDDYLGSVLKVEDFDQVQIKGGSVDGKLYGISLGANSAAMMVNAAAFEEAG
VDLPSPSTTWEEMAKIGAEITQAGKRKGFYGLSDGSAVEPLLENWLRQRGKALFTAEGKIGYDANDAAEWFTMWQNMREA
KACVPPDVQALDQYTVETSPLSLGKSAASFAHSNQFVAYQGVSKDKLALRSHPLISKDSKGGHYRKPSMFFSVAAQTKDP
ELGAKYVNFFVKDPKAAEILGVERGVPESSAVREALAPTLDELGRAMLDYVSGLGPLAGELPPPPPSGAGEAEFALRNVA
EQVGFGQLDAKQGGETLVNEVSQILARG

Sequences:

>Translated_428_residues
MTHKISRRSVLAGGAALLSMSAMARSALAQEARLRVLWWGSQARADRTNKVNQLFQEQNAGVAINGEFLGWSDYWPRLAT
QVAGRNAPDIIQMDYRYIVEYARRGALAPLDDYLGSVLKVEDFDQVQIKGGSVDGKLYGISLGANSAAMMVNAAAFEEAG
VDLPSPSTTWEEMAKIGAEITQAGKRKGFYGLSDGSAVEPLLENWLRQRGKALFTAEGKIGYDANDAAEWFTMWQNMREA
KACVPPDVQALDQYTVETSPLSLGKSAASFAHSNQFVAYQGVSKDKLALRSHPLISKDSKGGHYRKPSMFFSVAAQTKDP
ELGAKYVNFFVKDPKAAEILGVERGVPESSAVREALAPTLDELGRAMLDYVSGLGPLAGELPPPPPSGAGEAEFALRNVA
EQVGFGQLDAKQGGETLVNEVSQILARG
>Mature_427_residues
THKISRRSVLAGGAALLSMSAMARSALAQEARLRVLWWGSQARADRTNKVNQLFQEQNAGVAINGEFLGWSDYWPRLATQ
VAGRNAPDIIQMDYRYIVEYARRGALAPLDDYLGSVLKVEDFDQVQIKGGSVDGKLYGISLGANSAAMMVNAAAFEEAGV
DLPSPSTTWEEMAKIGAEITQAGKRKGFYGLSDGSAVEPLLENWLRQRGKALFTAEGKIGYDANDAAEWFTMWQNMREAK
ACVPPDVQALDQYTVETSPLSLGKSAASFAHSNQFVAYQGVSKDKLALRSHPLISKDSKGGHYRKPSMFFSVAAQTKDPE
LGAKYVNFFVKDPKAAEILGVERGVPESSAVREALAPTLDELGRAMLDYVSGLGPLAGELPPPPPSGAGEAEFALRNVAE
QVGFGQLDAKQGGETLVNEVSQILARG

Specific function: May play role in the degradation of type I rhamnogalacturonan derived from plant cell walls [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 46167; Mature: 46035

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHKISRRSVLAGGAALLSMSAMARSALAQEARLRVLWWGSQARADRTNKVNQLFQEQNA
CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHCEEEEEECCHHCCCHHHHHHHHHHHCCC
GVAINGEFLGWSDYWPRLATQVAGRNAPDIIQMDYRYIVEYARRGALAPLDDYLGSVLKV
CEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCEEEE
EDFDQVQIKGGSVDGKLYGISLGANSAAMMVNAAAFEEAGVDLPSPSTTWEEMAKIGAEI
CCCCEEEEECCCCCCEEEEEEECCCCHHHEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHH
TQAGKRKGFYGLSDGSAVEPLLENWLRQRGKALFTAEGKIGYDANDAAEWFTMWQNMREA
HHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHH
KACVPPDVQALDQYTVETSPLSLGKSAASFAHSNQFVAYQGVSKDKLALRSHPLISKDSK
HCCCCCCHHHHHHHHCCCCCHHHCHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCCCCCC
GGHYRKPSMFFSVAAQTKDPELGAKYVNFFVKDPKAAEILGVERGVPESSAVREALAPTL
CCCCCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHH
DELGRAMLDYVSGLGPLAGELPPPPPSGAGEAEFALRNVAEQVGFGQLDAKQGGETLVNE
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHCCCHHHHHH
VSQILARG
HHHHHHCC
>Mature Secondary Structure 
THKISRRSVLAGGAALLSMSAMARSALAQEARLRVLWWGSQARADRTNKVNQLFQEQNA
CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHCEEEEEECCHHCCCHHHHHHHHHHHCCC
GVAINGEFLGWSDYWPRLATQVAGRNAPDIIQMDYRYIVEYARRGALAPLDDYLGSVLKV
CEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCEEEE
EDFDQVQIKGGSVDGKLYGISLGANSAAMMVNAAAFEEAGVDLPSPSTTWEEMAKIGAEI
CCCCEEEEECCCCCCEEEEEEECCCCHHHEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHH
TQAGKRKGFYGLSDGSAVEPLLENWLRQRGKALFTAEGKIGYDANDAAEWFTMWQNMREA
HHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHH
KACVPPDVQALDQYTVETSPLSLGKSAASFAHSNQFVAYQGVSKDKLALRSHPLISKDSK
HCCCCCCHHHHHHHHCCCCCHHHCHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCCCCCC
GGHYRKPSMFFSVAAQTKDPELGAKYVNFFVKDPKAAEILGVERGVPESSAVREALAPTL
CCCCCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHH
DELGRAMLDYVSGLGPLAGELPPPPPSGAGEAEFALRNVAEQVGFGQLDAKQGGETLVNE
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHCCCHHHHHH
VSQILARG
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]