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The map label for this gene is soxB [H]

Identifier: 150398479

GI number: 150398479

Start: 3481318

End: 3482568

Strand: Reverse

Name: soxB [H]

Synonym: Smed_3289

Alternate gene names: 150398479

Gene position: 3482568-3481318 (Counterclockwise)

Preceding gene: 150398485

Following gene: 150398478

Centisome position: 92.09

GC content: 62.19

Gene sequence:

>1251_bases
ATGCGCTACTCTGCCCTTTCCATCCTCCTCAATGGCCTGCGCGGCAACCGGAACTGGACGCCGGCATGGCGCCAGCCAGA
CCCGAAGCCACATTACGACGTGATCATCGTCGGCGGCGGTGGCCATGGCCTCGCGACTGCCTATTACCTTGCCAAGGAAT
TCGGCGTCACCAATGTCGCGGTGCTGGAAAAGAATTATGTCGGTTCGGGCAATGTCGGCCGCAACACGACGATCATTCGC
TCGAACTACCTGCTCCCCGGGAACAATCCATTTTACGAGCTCTCCATGCAGCTATGGGAGGGGCTGGAGCAGGATTTTAA
TTTCAATGCGATGGTCTCGCAGCGCGGCGTTCTCAATCTCTATCATTCGGACGCTCAGCGCGATGCCTACACGCGCCGCG
GCAATGCGATGCGGCTTCACGGGGTAGACGCAGAACTCCTCGATCGGGCGGCCGTACGCCGGATGCTGCCCTTTCTCGAT
TTCGACAATGCCCGCTTCCCCATCCAGGGCGGGCTCCTGCAGCGCCGCGGCGGTACCGTGCGCCACGACGCCGTCGCCTG
GGGATATGCCCGCGGCGCCGACAGCCGCGGGGTCGATATCATCCAGAATTGCGAAGTGACCGGGATCAGGCGAGAAGACG
GGCGAGTCACCGGCGTCGAGACCAGCCGCGGCTTCATCGGCTGCGGAAAGCTCGCCCTGGCGGCGGCCGGAAATTCCTCG
AAGGTCGCCGAACTGGCGGGATTGCGCCTGCCGATCGAGAGTCACGTGCTTCAGGCCTTCGTGTCGGAGGGGCTGAAACC
GTTCATTGACGGGGTGGTCACTTTCGGAGCCGGACATTTCTACGTTTCACAATCGGACAAGGGCGGCCTCGTCTTTGGCG
GCGATCTCGACGGCTATAATTCCTACGCTCAGCGCGGCAACCTGGCGACCGTCGAGCATGTGGCGGAGGCCGGAAAGGCC
ATGATTCCGGCATTGTCGCGGGTGCGGGTGCTGCGCTCCTGGGGCGGTATCATGGATATGAGCATGGACGGCTCGCCGAT
CATCGACCGCACGCCGATCGACAATCTCTATCTGAATGCCGGCTGGTGCTATGGCGGGTTCAAGGCGACCCCTGCCTCAG
GATTCTGCTTCGCACATCTCCTCGCCCGAGGCGCGCCGCAAAAGACAGCCGCAGCGTTTCGTCTCGACCGTTTCGAGCGA
GGCTACCTCCTTGATGAAAAAGGCCAAGGCGCTCAGCCGAACCTTCACTGA

Upstream 100 bases:

>100_bases
CGTCATGTCCGATTCCTACAGGAGAAGGACCCGAGCTTGCAACTCGCTGAATGAATCAGATGTTACCTTGCCGCCACGGA
TTTCTCATGAGGCGGCATCC

Downstream 100 bases:

>100_bases
TTTCGCGGACCAAGGAAAATTTCGAAATGGCAAGTCTCGTGCCCTGCCCGAATTGCGGGCGAAGACCCAAAGAAGAATTC
ACGATCAAGGGTGCCGCCCT

Product: sarcosine oxidase subunit beta family protein

Products: NA

Alternate protein names: Sarcosine oxidase subunit B [H]

Number of amino acids: Translated: 416; Mature: 416

Protein sequence:

>416_residues
MRYSALSILLNGLRGNRNWTPAWRQPDPKPHYDVIIVGGGGHGLATAYYLAKEFGVTNVAVLEKNYVGSGNVGRNTTIIR
SNYLLPGNNPFYELSMQLWEGLEQDFNFNAMVSQRGVLNLYHSDAQRDAYTRRGNAMRLHGVDAELLDRAAVRRMLPFLD
FDNARFPIQGGLLQRRGGTVRHDAVAWGYARGADSRGVDIIQNCEVTGIRREDGRVTGVETSRGFIGCGKLALAAAGNSS
KVAELAGLRLPIESHVLQAFVSEGLKPFIDGVVTFGAGHFYVSQSDKGGLVFGGDLDGYNSYAQRGNLATVEHVAEAGKA
MIPALSRVRVLRSWGGIMDMSMDGSPIIDRTPIDNLYLNAGWCYGGFKATPASGFCFAHLLARGAPQKTAAAFRLDRFER
GYLLDEKGQGAQPNLH

Sequences:

>Translated_416_residues
MRYSALSILLNGLRGNRNWTPAWRQPDPKPHYDVIIVGGGGHGLATAYYLAKEFGVTNVAVLEKNYVGSGNVGRNTTIIR
SNYLLPGNNPFYELSMQLWEGLEQDFNFNAMVSQRGVLNLYHSDAQRDAYTRRGNAMRLHGVDAELLDRAAVRRMLPFLD
FDNARFPIQGGLLQRRGGTVRHDAVAWGYARGADSRGVDIIQNCEVTGIRREDGRVTGVETSRGFIGCGKLALAAAGNSS
KVAELAGLRLPIESHVLQAFVSEGLKPFIDGVVTFGAGHFYVSQSDKGGLVFGGDLDGYNSYAQRGNLATVEHVAEAGKA
MIPALSRVRVLRSWGGIMDMSMDGSPIIDRTPIDNLYLNAGWCYGGFKATPASGFCFAHLLARGAPQKTAAAFRLDRFER
GYLLDEKGQGAQPNLH
>Mature_416_residues
MRYSALSILLNGLRGNRNWTPAWRQPDPKPHYDVIIVGGGGHGLATAYYLAKEFGVTNVAVLEKNYVGSGNVGRNTTIIR
SNYLLPGNNPFYELSMQLWEGLEQDFNFNAMVSQRGVLNLYHSDAQRDAYTRRGNAMRLHGVDAELLDRAAVRRMLPFLD
FDNARFPIQGGLLQRRGGTVRHDAVAWGYARGADSRGVDIIQNCEVTGIRREDGRVTGVETSRGFIGCGKLALAAAGNSS
KVAELAGLRLPIESHVLQAFVSEGLKPFIDGVVTFGAGHFYVSQSDKGGLVFGGDLDGYNSYAQRGNLATVEHVAEAGKA
MIPALSRVRVLRSWGGIMDMSMDGSPIIDRTPIDNLYLNAGWCYGGFKATPASGFCFAHLLARGAPQKTAAAFRLDRFER
GYLLDEKGQGAQPNLH

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the soxB family [H]

Homologues:

Organism=Homo sapiens, GI197927446, Length=398, Percent_Identity=24.3718592964824, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI21361378, Length=398, Percent_Identity=24.3718592964824, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI24797151, Length=363, Percent_Identity=22.5895316804408, Blast_Score=75, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR006278 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 45345; Mature: 45345

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYSALSILLNGLRGNRNWTPAWRQPDPKPHYDVIIVGGGGHGLATAYYLAKEFGVTNVA
CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEE
VLEKNYVGSGNVGRNTTIIRSNYLLPGNNPFYELSMQLWEGLEQDFNFNAMVSQRGVLNL
EEECCCCCCCCCCCCEEEEEECEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEE
YHSDAQRDAYTRRGNAMRLHGVDAELLDRAAVRRMLPFLDFDNARFPIQGGLLQRRGGTV
ECCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCC
RHDAVAWGYARGADSRGVDIIQNCEVTGIRREDGRVTGVETSRGFIGCGKLALAAAGNSS
EEHHEEEHHHCCCCCCCCCEEECCCEEEEECCCCEEEEEECCCCEEEECCEEEEECCCCC
KVAELAGLRLPIESHVLQAFVSEGLKPFIDGVVTFGAGHFYVSQSDKGGLVFGGDLDGYN
HHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCH
SYAQRGNLATVEHVAEAGKAMIPALSRVRVLRSWGGIMDMSMDGSPIIDRTPIDNLYLNA
HHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEC
GWCYGGFKATPASGFCFAHLLARGAPQKTAAAFRLDRFERGYLLDEKGQGAQPNLH
EEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCC
>Mature Secondary Structure
MRYSALSILLNGLRGNRNWTPAWRQPDPKPHYDVIIVGGGGHGLATAYYLAKEFGVTNVA
CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEE
VLEKNYVGSGNVGRNTTIIRSNYLLPGNNPFYELSMQLWEGLEQDFNFNAMVSQRGVLNL
EEECCCCCCCCCCCCEEEEEECEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEE
YHSDAQRDAYTRRGNAMRLHGVDAELLDRAAVRRMLPFLDFDNARFPIQGGLLQRRGGTV
ECCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCC
RHDAVAWGYARGADSRGVDIIQNCEVTGIRREDGRVTGVETSRGFIGCGKLALAAAGNSS
EEHHEEEHHHCCCCCCCCCEEECCCEEEEECCCCEEEEEECCCCEEEECCEEEEECCCCC
KVAELAGLRLPIESHVLQAFVSEGLKPFIDGVVTFGAGHFYVSQSDKGGLVFGGDLDGYN
HHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCH
SYAQRGNLATVEHVAEAGKAMIPALSRVRVLRSWGGIMDMSMDGSPIIDRTPIDNLYLNA
HHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEC
GWCYGGFKATPASGFCFAHLLARGAPQKTAAAFRLDRFERGYLLDEKGQGAQPNLH
EEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]