Click here to switch to the map view.

The map label for this gene is ydiF [H]

Identifier: 150398365

GI number: 150398365

Start: 3335567

End: 3337186

Strand: Reverse

Name: ydiF [H]

Synonym: Smed_3173

Alternate gene names: 150398365

Gene position: 3337186-3335567 (Counterclockwise)

Preceding gene: 150398366

Following gene: 150398364

Centisome position: 88.24

GC content: 62.35

Gene sequence:

>1620_bases
ATGACGACGGGCAAACACATCTCGCCTGCGCAAGCAGCCGGTCTGATCCCCGACGGGGCGATCGTTTCGGTTTCCTCCTC
CAGCGGCCTTGGCTGCCCGGACCTGATGCTGAAGGCGATCGGCGAGCGTTTCGAGGCGACCGGGCACCCGCGTGACCTGA
CGACTCTGCATCCGATCGCCGCCGGCGACATGAGCGGCATCAAGGGCGTGGACCACATCGCCAGGAAGGGCCTGCTGAAG
AAAATCATCGGCGGCTCCTATCCCTCCGGACCATCGAGCGCCGAGCCGCCCCTGATCTGGCAGATGATCGGCGCGAACGA
GGTGGCGGCCTACAACATCCCATCGGGCATTCTCTTCGACATGCATCGTGAGGCGGCGGCGAAGCGTCCCGGCGTAATGA
CCAAGGTCGGGCTCGACACTTTCGTCGACCCTTCGCGCGAAGGCTGCGCCATGAACGCGTCCGCAGCATCCGAACCGGTC
GTCCAGAAGATCGCCTTCGAGGGGGAGGATTGGCTTTATTTCAAGGCGATCGCGCCCCAGGTGGCGATCATCCGGGCCAC
GACGGCGGACGAACGCGGCAATCTCACCTATGAGCATGAGGGTGCCTATCTCGGCGGGCTCGATCAGGCCCTCGCAGCCC
GCAACAATGGCGGCATCGTCATTGCCCAGGTGAAGCGACTAGCCAAGGAAGGCTCGCTGAAGCCTCATGACGTGCGCGTG
CCGGGCGTATTGGTCGATTATGTCGTCGTCGATCCCGATCAGAAGCAGACGACGCAGACGCTTTACGACCCGGCCATTTC
CGGCGAGATCTTTCGGCCGCTCGACAGTTTCCGACTGCCGGAATTCAATATTCAAAAGGTGATCGCGCGGCGTGTGGCGC
AGGAACTCGAAGCAGGCAGTGCCGTCAATCTAGGCTTCGGCATTTCCGCCAACGTCCCGCGTATTCTCATCGAAGAAGGG
CTGCACGGTGCCGTGACCTGGGTCATCGAACAGGGTGCCGTCGGCGGTGTGCCGCTCCTCGATTTCGCCTTCGGCTGCGC
CTCGAATGCGGACGCCTTCATGCCATCGCCCTATCAGTTCACCTATTTCCAGGGGGCGGGCTTCGATGCATCTCTGCTCT
CCTTCCTGGAGATCGACCGCACCGGCTCCGTCAATGTTTCGCAACTCAGCTTCCGCCCCCATGTGACGGCGGGAGCAGGC
GGGTTCGTCGACATCACCGCGCGGGCGAAGAAGATCGTCTTCTCCGGCATGTTCAATGCCGGCGCCAAGCTCGCAGTTTC
CGATGGCCGGCTCGTCATCCACAGGGAAGGCAAGCTCAAGAAGCTGGTAAATCAGGTCGAACACGTCACCTTCTCCGGCC
GCCGGGCCGTCGAGCAGCGGCAGAAGATCACCTATGTGACCGAGCGTTGCGTGATGAAGCTGACGCCGGAGGGTGTCGTT
CTCACTGAGATCGCCCCGGGCGTCGACCTCGAAACGCATATTCTCCGCCAGTCGGAATTTCCGTTGATGGTCTCCGACAA
ACTCAAGCTCATGGATTCGGCACTCTTCGGTGAAGCGCCTATCGGGCTGGCGCTGCCCATGAAAAGCCAGCGCCGGCTGG
CGGGAGGTGTCGATGGCTGA

Upstream 100 bases:

>100_bases
AGCGGCGAGGATGGGGTCTGGTCGCTCGCCACCGGTCTGGCGGTAGTCAAAGCGGCGGCGACTGGCGCGGCCGTCGAGAT
CGAAACGGGACTCTGACGCG

Downstream 100 bases:

>100_bases
CGAACGAATCCGTCTCGATTTCGACGGTCCGATCGCGACCCTGACGGTTTCGCGGCCGGAAAAGCTCAATGCCTTCGACA
TCGACATGCTGAGAGCGCTC

Product: coenzyme A transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 539; Mature: 538

Protein sequence:

>539_residues
MTTGKHISPAQAAGLIPDGAIVSVSSSSGLGCPDLMLKAIGERFEATGHPRDLTTLHPIAAGDMSGIKGVDHIARKGLLK
KIIGGSYPSGPSSAEPPLIWQMIGANEVAAYNIPSGILFDMHREAAAKRPGVMTKVGLDTFVDPSREGCAMNASAASEPV
VQKIAFEGEDWLYFKAIAPQVAIIRATTADERGNLTYEHEGAYLGGLDQALAARNNGGIVIAQVKRLAKEGSLKPHDVRV
PGVLVDYVVVDPDQKQTTQTLYDPAISGEIFRPLDSFRLPEFNIQKVIARRVAQELEAGSAVNLGFGISANVPRILIEEG
LHGAVTWVIEQGAVGGVPLLDFAFGCASNADAFMPSPYQFTYFQGAGFDASLLSFLEIDRTGSVNVSQLSFRPHVTAGAG
GFVDITARAKKIVFSGMFNAGAKLAVSDGRLVIHREGKLKKLVNQVEHVTFSGRRAVEQRQKITYVTERCVMKLTPEGVV
LTEIAPGVDLETHILRQSEFPLMVSDKLKLMDSALFGEAPIGLALPMKSQRRLAGGVDG

Sequences:

>Translated_539_residues
MTTGKHISPAQAAGLIPDGAIVSVSSSSGLGCPDLMLKAIGERFEATGHPRDLTTLHPIAAGDMSGIKGVDHIARKGLLK
KIIGGSYPSGPSSAEPPLIWQMIGANEVAAYNIPSGILFDMHREAAAKRPGVMTKVGLDTFVDPSREGCAMNASAASEPV
VQKIAFEGEDWLYFKAIAPQVAIIRATTADERGNLTYEHEGAYLGGLDQALAARNNGGIVIAQVKRLAKEGSLKPHDVRV
PGVLVDYVVVDPDQKQTTQTLYDPAISGEIFRPLDSFRLPEFNIQKVIARRVAQELEAGSAVNLGFGISANVPRILIEEG
LHGAVTWVIEQGAVGGVPLLDFAFGCASNADAFMPSPYQFTYFQGAGFDASLLSFLEIDRTGSVNVSQLSFRPHVTAGAG
GFVDITARAKKIVFSGMFNAGAKLAVSDGRLVIHREGKLKKLVNQVEHVTFSGRRAVEQRQKITYVTERCVMKLTPEGVV
LTEIAPGVDLETHILRQSEFPLMVSDKLKLMDSALFGEAPIGLALPMKSQRRLAGGVDG
>Mature_538_residues
TTGKHISPAQAAGLIPDGAIVSVSSSSGLGCPDLMLKAIGERFEATGHPRDLTTLHPIAAGDMSGIKGVDHIARKGLLKK
IIGGSYPSGPSSAEPPLIWQMIGANEVAAYNIPSGILFDMHREAAAKRPGVMTKVGLDTFVDPSREGCAMNASAASEPVV
QKIAFEGEDWLYFKAIAPQVAIIRATTADERGNLTYEHEGAYLGGLDQALAARNNGGIVIAQVKRLAKEGSLKPHDVRVP
GVLVDYVVVDPDQKQTTQTLYDPAISGEIFRPLDSFRLPEFNIQKVIARRVAQELEAGSAVNLGFGISANVPRILIEEGL
HGAVTWVIEQGAVGGVPLLDFAFGCASNADAFMPSPYQFTYFQGAGFDASLLSFLEIDRTGSVNVSQLSFRPHVTAGAGG
FVDITARAKKIVFSGMFNAGAKLAVSDGRLVIHREGKLKKLVNQVEHVTFSGRRAVEQRQKITYVTERCVMKLTPEGVVL
TEIAPGVDLETHILRQSEFPLMVSDKLKLMDSALFGEAPIGLALPMKSQRRLAGGVDG

Specific function: Unknown

COG id: COG4670

COG function: function code I; Acyl CoA:acetate/3-ketoacid CoA transferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae AtoD [H]

Homologues:

Organism=Escherichia coli, GI1787985, Length=528, Percent_Identity=38.2575757575758, Blast_Score=355, Evalue=5e-99,
Organism=Escherichia coli, GI1788551, Length=252, Percent_Identity=25.3968253968254, Blast_Score=73, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014388
- InterPro:   IPR004165 [H]

Pfam domain/function: PF01144 CoA_trans [H]

EC number: NA

Molecular weight: Translated: 57520; Mature: 57389

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTGKHISPAQAAGLIPDGAIVSVSSSSGLGCPDLMLKAIGERFEATGHPRDLTTLHPIA
CCCCCCCCHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCEECCCC
AGDMSGIKGVDHIARKGLLKKIIGGSYPSGPSSAEPPLIWQMIGANEVAAYNIPSGILFD
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEH
MHREAAAKRPGVMTKVGLDTFVDPSREGCAMNASAASEPVVQKIAFEGEDWLYFKAIAPQ
HHHHHHHCCCCCEEEECCHHHCCCCCCCCEECCCCCCCHHHHHHHCCCCCEEEEEECCCC
VAIIRATTADERGNLTYEHEGAYLGGLDQALAARNNGGIVIAQVKRLAKEGSLKPHDVRV
EEEEEEECCCCCCCEEEEECCCEECCHHHHHHHCCCCCEEEHHHHHHHHHCCCCCCCEEC
PGVLVDYVVVDPDQKQTTQTLYDPAISGEIFRPLDSFRLPEFNIQKVIARRVAQELEAGS
CCEEEEEEEECCCCHHHHHHHHCCCCCCHHHCCHHHCCCCCCCHHHHHHHHHHHHHHCCC
AVNLGFGISANVPRILIEEGLHGAVTWVIEQGAVGGVPLLDFAFGCASNADAFMPSPYQF
EEEECCCCCCCCCHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCEEE
TYFQGAGFDASLLSFLEIDRTGSVNVSQLSFRPHVTAGAGGFVDITARAKKIVFSGMFNA
EEEECCCCCHHHHHHHHHCCCCCCCEEEEEECCCEECCCCCEEEEEHHHHHHHHHHHCCC
GAKLAVSDGRLVIHREGKLKKLVNQVEHVTFSGRRAVEQRQKITYVTERCVMKLTPEGVV
CCEEEEECCEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEECCCCEE
LTEIAPGVDLETHILRQSEFPLMVSDKLKLMDSALFGEAPIGLALPMKSQRRLAGGVDG
EEECCCCCCHHHHHHHCCCCCEEECHHHHHHHHHHCCCCCCCEECCCCHHHHCCCCCCC
>Mature Secondary Structure 
TTGKHISPAQAAGLIPDGAIVSVSSSSGLGCPDLMLKAIGERFEATGHPRDLTTLHPIA
CCCCCCCHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCEECCCC
AGDMSGIKGVDHIARKGLLKKIIGGSYPSGPSSAEPPLIWQMIGANEVAAYNIPSGILFD
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEH
MHREAAAKRPGVMTKVGLDTFVDPSREGCAMNASAASEPVVQKIAFEGEDWLYFKAIAPQ
HHHHHHHCCCCCEEEECCHHHCCCCCCCCEECCCCCCCHHHHHHHCCCCCEEEEEECCCC
VAIIRATTADERGNLTYEHEGAYLGGLDQALAARNNGGIVIAQVKRLAKEGSLKPHDVRV
EEEEEEECCCCCCCEEEEECCCEECCHHHHHHHCCCCCEEEHHHHHHHHHCCCCCCCEEC
PGVLVDYVVVDPDQKQTTQTLYDPAISGEIFRPLDSFRLPEFNIQKVIARRVAQELEAGS
CCEEEEEEEECCCCHHHHHHHHCCCCCCHHHCCHHHCCCCCCCHHHHHHHHHHHHHHCCC
AVNLGFGISANVPRILIEEGLHGAVTWVIEQGAVGGVPLLDFAFGCASNADAFMPSPYQF
EEEECCCCCCCCCHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCEEE
TYFQGAGFDASLLSFLEIDRTGSVNVSQLSFRPHVTAGAGGFVDITARAKKIVFSGMFNA
EEEECCCCCHHHHHHHHHCCCCCCCEEEEEECCCEECCCCCEEEEEHHHHHHHHHHHCCC
GAKLAVSDGRLVIHREGKLKKLVNQVEHVTFSGRRAVEQRQKITYVTERCVMKLTPEGVV
CCEEEEECCEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEECCCCEE
LTEIAPGVDLETHILRQSEFPLMVSDKLKLMDSALFGEAPIGLALPMKSQRRLAGGVDG
EEECCCCCCHHHHHHHCCCCCEEECHHHHHHHHHHCCCCCCCEECCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 3541912; 7984428 [H]