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The map label for this gene is ydcJ [H]

Identifier: 150398349

GI number: 150398349

Start: 3315466

End: 3316884

Strand: Direct

Name: ydcJ [H]

Synonym: Smed_3157

Alternate gene names: 150398349

Gene position: 3315466-3316884 (Clockwise)

Preceding gene: 150398345

Following gene: 150398350

Centisome position: 87.67

GC content: 63.5

Gene sequence:

>1419_bases
GTGAAAGAGAATAGTTTCGTATCCGCCGACGATATCCGCTCGGCCTTTTCGGCTGCGATGTCGCGCATGTATCGCGAGGA
AGTGCCGGCTTACGGCACGCTGATGGAGCTCGTCGCGAGGGTCAACGGCGAAACGCTGTCGGCCGACTCCGCATGGAAGG
AGCGCCTGGAAGCGACCGATTCGCTCGACCGTATTTCCGAGGAGCGTCACGGCGCGATCCGCCTCGGCACGCCGGCGGAG
CTTTCGATGATGCGCCGTGTCTTCGCGGTGATGGGGATGTATCCGGTCGGCTATTACGATCTGTCGACCGCGGGCGTGCC
GGTGCATTCCACCGCCTTCCGCCCGGTCGGAGACGCGGCGCTGAAACGCAATCCGTTTCGCGTCTTCACATCTCTTCTGA
GGCTCGACCTTATTGCCGACGAAGCCCTGCGCGCCGAGGCCGAAGCAATTCTTAAGGCGCGCCGGATCTTCACTCCGGGC
GCAATGGAGCTGACCGGACAGGCCGAGCGCGAGGGTGGCCTCGACAAGGCCGGGGCCGAGCGTTTCGTCGCCGAAGTCAT
CGAGACATTCCGCTGGCACGACAGGGCCAATGTCAGCGCCGACATGTACCAGCGTCTCCACGATGCGCACCGCCTGATCG
CCGACGTGGTCTCCTTCAAGGGTCCGCACATCAACCATTTGACGCCGCGCACGCTCGACATCGATCAGGTCCAGGCGCTG
ATGCCCGAATACGGCATTGCGCCGAAAGCCGTCGTCGAAGGACCGCCGACGCGTAAATGCCCGATCCTGCTTCGCCAGAC
CTCCTTCAAGGCGCTCGAAGAGCCGGTTTCTTTCCGCGGCGCCGATGGTGGCTGGAAGGCCGGTTCCCATACCGCGCGCT
TCGGCGAAATCGAACAGCGCGGCATCGCATTGACGCCGAAGGGCCGCGGTCTCTACGACCGGCTGCTCGACGAATCGCGC
AAGATCGTGCGCCCGGCCGCCGATGGTTCGAACGCCGGAGAATACGGTGCTGCCCTGGCCCAGGTATTCGAAGCCTTTCC
GGACCATTGGGCGGAGATCCGTGCTGCCGGCCTCGGCTATTTCAGCTACTCCCTGACGGAAAAGGGCAGGCAGGCGAAGA
TGTCGGTTTGCCTGGCGGAAAGGGGCCGTCGCGACCTGGACTCGCTGATCGCTGATGGCCTCGTTCAATTCGATCCTATC
GTCTATGAGGACTTCCTTCCGGTCAGCGCCGCCGGTATCTTCCAGTCGAATCTCGGCGACGGCGCGCAGCAGGACTTCGT
TGCGAGCCCGAACCAGAAGCGCTTCGAGACGGATCTCGGAGTCGCGGTCCTCAACGAATTCGATCACTATGCCGGCATCG
AACAGGCATCGATCGAAGACTGCCTCCAGGCGCTCACCGCCGCCGTGGCAGCGGAGTGA

Upstream 100 bases:

>100_bases
CAACATAGTCAGAAGCAGCGCGATCCAAGCCAATACCCTTCCGATATGATCAGAATTAAGAATGACCTTGTCCTTCATCC
ATAGCGCGAGGCGAGCCCCA

Downstream 100 bases:

>100_bases
TACGTCGCCAATGATTGACGAGCACCATATCGACGCACTGGAGAAGCTCCTTGGCGACAAGGGCATCGTCACGGGCCGGG
AGGACATGGAAGCTTATGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 472; Mature: 472

Protein sequence:

>472_residues
MKENSFVSADDIRSAFSAAMSRMYREEVPAYGTLMELVARVNGETLSADSAWKERLEATDSLDRISEERHGAIRLGTPAE
LSMMRRVFAVMGMYPVGYYDLSTAGVPVHSTAFRPVGDAALKRNPFRVFTSLLRLDLIADEALRAEAEAILKARRIFTPG
AMELTGQAEREGGLDKAGAERFVAEVIETFRWHDRANVSADMYQRLHDAHRLIADVVSFKGPHINHLTPRTLDIDQVQAL
MPEYGIAPKAVVEGPPTRKCPILLRQTSFKALEEPVSFRGADGGWKAGSHTARFGEIEQRGIALTPKGRGLYDRLLDESR
KIVRPAADGSNAGEYGAALAQVFEAFPDHWAEIRAAGLGYFSYSLTEKGRQAKMSVCLAERGRRDLDSLIADGLVQFDPI
VYEDFLPVSAAGIFQSNLGDGAQQDFVASPNQKRFETDLGVAVLNEFDHYAGIEQASIEDCLQALTAAVAAE

Sequences:

>Translated_472_residues
MKENSFVSADDIRSAFSAAMSRMYREEVPAYGTLMELVARVNGETLSADSAWKERLEATDSLDRISEERHGAIRLGTPAE
LSMMRRVFAVMGMYPVGYYDLSTAGVPVHSTAFRPVGDAALKRNPFRVFTSLLRLDLIADEALRAEAEAILKARRIFTPG
AMELTGQAEREGGLDKAGAERFVAEVIETFRWHDRANVSADMYQRLHDAHRLIADVVSFKGPHINHLTPRTLDIDQVQAL
MPEYGIAPKAVVEGPPTRKCPILLRQTSFKALEEPVSFRGADGGWKAGSHTARFGEIEQRGIALTPKGRGLYDRLLDESR
KIVRPAADGSNAGEYGAALAQVFEAFPDHWAEIRAAGLGYFSYSLTEKGRQAKMSVCLAERGRRDLDSLIADGLVQFDPI
VYEDFLPVSAAGIFQSNLGDGAQQDFVASPNQKRFETDLGVAVLNEFDHYAGIEQASIEDCLQALTAAVAAE
>Mature_472_residues
MKENSFVSADDIRSAFSAAMSRMYREEVPAYGTLMELVARVNGETLSADSAWKERLEATDSLDRISEERHGAIRLGTPAE
LSMMRRVFAVMGMYPVGYYDLSTAGVPVHSTAFRPVGDAALKRNPFRVFTSLLRLDLIADEALRAEAEAILKARRIFTPG
AMELTGQAEREGGLDKAGAERFVAEVIETFRWHDRANVSADMYQRLHDAHRLIADVVSFKGPHINHLTPRTLDIDQVQAL
MPEYGIAPKAVVEGPPTRKCPILLRQTSFKALEEPVSFRGADGGWKAGSHTARFGEIEQRGIALTPKGRGLYDRLLDESR
KIVRPAADGSNAGEYGAALAQVFEAFPDHWAEIRAAGLGYFSYSLTEKGRQAKMSVCLAERGRRDLDSLIADGLVQFDPI
VYEDFLPVSAAGIFQSNLGDGAQQDFVASPNQKRFETDLGVAVLNEFDHYAGIEQASIEDCLQALTAAVAAE

Specific function: Unknown

COG id: COG5383

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv3292 [H]

Homologues:

Organism=Escherichia coli, GI1787692, Length=455, Percent_Identity=54.7252747252747, Blast_Score=484, Evalue=1e-138,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009770 [H]

Pfam domain/function: PF07063 DUF1338 [H]

EC number: NA

Molecular weight: Translated: 51847; Mature: 51847

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKENSFVSADDIRSAFSAAMSRMYREEVPAYGTLMELVARVNGETLSADSAWKERLEATD
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
SLDRISEERHGAIRLGTPAELSMMRRVFAVMGMYPVGYYDLSTAGVPVHSTAFRPVGDAA
HHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCHHH
LKRNPFRVFTSLLRLDLIADEALRAEAEAILKARRIFTPGAMELTGQAEREGGLDKAGAE
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCHHHCCCCCHHHHH
RFVAEVIETFRWHDRANVSADMYQRLHDAHRLIADVVSFKGPHINHLTPRTLDIDQVQAL
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
MPEYGIAPKAVVEGPPTRKCPILLRQTSFKALEEPVSFRGADGGWKAGSHTARFGEIEQR
HHHCCCCCCHHCCCCCCCCCCCEEHHHHHHHHHCCHHCCCCCCCCCCCCCCHHHCCHHHC
GIALTPKGRGLYDRLLDESRKIVRPAADGSNAGEYGAALAQVFEAFPDHWAEIRAAGLGY
CEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSYSLTEKGRQAKMSVCLAERGRRDLDSLIADGLVQFDPIVYEDFLPVSAAGIFQSNLGD
HHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHCCHHHCCCHHHHHCCCHHHHHHHHHCCCC
GAQQDFVASPNQKRFETDLGVAVLNEFDHYAGIEQASIEDCLQALTAAVAAE
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKENSFVSADDIRSAFSAAMSRMYREEVPAYGTLMELVARVNGETLSADSAWKERLEATD
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
SLDRISEERHGAIRLGTPAELSMMRRVFAVMGMYPVGYYDLSTAGVPVHSTAFRPVGDAA
HHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCHHH
LKRNPFRVFTSLLRLDLIADEALRAEAEAILKARRIFTPGAMELTGQAEREGGLDKAGAE
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCHHHCCCCCHHHHH
RFVAEVIETFRWHDRANVSADMYQRLHDAHRLIADVVSFKGPHINHLTPRTLDIDQVQAL
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
MPEYGIAPKAVVEGPPTRKCPILLRQTSFKALEEPVSFRGADGGWKAGSHTARFGEIEQR
HHHCCCCCCHHCCCCCCCCCCCEEHHHHHHHHHCCHHCCCCCCCCCCCCCCHHHCCHHHC
GIALTPKGRGLYDRLLDESRKIVRPAADGSNAGEYGAALAQVFEAFPDHWAEIRAAGLGY
CEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSYSLTEKGRQAKMSVCLAERGRRDLDSLIADGLVQFDPIVYEDFLPVSAAGIFQSNLGD
HHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHCCHHHCCCHHHHHCCCHHHHHHHHHCCCC
GAQQDFVASPNQKRFETDLGVAVLNEFDHYAGIEQASIEDCLQALTAAVAAE
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]