| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is hisJ [H]
Identifier: 150398296
GI number: 150398296
Start: 3247507
End: 3248316
Strand: Direct
Name: hisJ [H]
Synonym: Smed_3102
Alternate gene names: 150398296
Gene position: 3247507-3248316 (Clockwise)
Preceding gene: 150398295
Following gene: 150398297
Centisome position: 85.87
GC content: 60.74
Gene sequence:
>810_bases ATGACAATACGTCGCCACGTGCTTGCGGGCATTGCCGCAGTTCTTGCCGCTCCACTCGCAGTCTCCGCGCCCGCTTTCGC AAGCGACCTGCCCGACCTCGGCGGCAAGACGGTCGTCGTGGTGACCGAGAACGCCTACCCCCCGCTGCAGTTCGTGGATC CCAAATCCGGCCAGGCCATCGGCTGGGAATATGACGCGATGAACGAGATCGCCAAGCGGCTGAACTTCAAGGTCGAATAT CAGAACACCAGCTGGGATGCGATGATCCAGGCCGTTTCCGACGGTCAGTACCAGATCGGAATGACCGGGATCACCATCAA GGACGACCGCAAGGAAAAGGTCGATTTTTCCGATCCCTACCTGCGATCGGAGCAGTTCATGCTGGTGCGGGGCGACGAGA CCCGCTTTAGCGATGCGAAGAGTTTCGCGGCGCTTGAAAGCGGGTTGATCGGCGCTCAGCCCGGTACCTCGCCGTTCTAC ACGGCAGTTTACGAAATTCTCGATGGCAACGAGCAGAACCCGCGGATCAAGCTGTTCGAGACCTTCGGTGCGACGGTGCA GGCCCTGAAGGCCGGCGACGTCGATCTGGTCCTGACCGACAGCGTTGCGGCCAAGGGCTATGTCGATTCCTCCGAAGGCC AGCTCAAGGTGGTCGGCGGGCCGCTCGGCACCGAGGATTTCGGCTTCATCTTCCCGAAGGGATCGGAGCTTGTGGCGCCG GTCAATGCCGCCATCAAGGCGCTCAAGGACGACGGCACCTTGGACGCGCTCAACAAGAAGTGGTTTCTCGATTACAAAAT GGGCGGCTGA
Upstream 100 bases:
>100_bases GAAAGGCGGCCTCAGGGCCGCCTTTCTTTTTGCACCTGCCGCTTGTGTTCCCCATAGATTTTATGACATTTTCGGCCGCC ACAATCTTTGGGAGTCCTCA
Downstream 100 bases:
>100_bases TCCCTGGAGCGGGAGAGGAATCGTGTGCGGCTTGCTGCCGCACCCCGCTCCCCGTTATTGGAATTGTAATGACGCCGGTC CAATCATCCGACACTCCGTC
Product: extracellular solute-binding protein
Products: ADP; phosphate; L-glutamine [Cytoplasm] [C]
Alternate protein names: HBP [H]
Number of amino acids: Translated: 269; Mature: 268
Protein sequence:
>269_residues MTIRRHVLAGIAAVLAAPLAVSAPAFASDLPDLGGKTVVVVTENAYPPLQFVDPKSGQAIGWEYDAMNEIAKRLNFKVEY QNTSWDAMIQAVSDGQYQIGMTGITIKDDRKEKVDFSDPYLRSEQFMLVRGDETRFSDAKSFAALESGLIGAQPGTSPFY TAVYEILDGNEQNPRIKLFETFGATVQALKAGDVDLVLTDSVAAKGYVDSSEGQLKVVGGPLGTEDFGFIFPKGSELVAP VNAAIKALKDDGTLDALNKKWFLDYKMGG
Sequences:
>Translated_269_residues MTIRRHVLAGIAAVLAAPLAVSAPAFASDLPDLGGKTVVVVTENAYPPLQFVDPKSGQAIGWEYDAMNEIAKRLNFKVEY QNTSWDAMIQAVSDGQYQIGMTGITIKDDRKEKVDFSDPYLRSEQFMLVRGDETRFSDAKSFAALESGLIGAQPGTSPFY TAVYEILDGNEQNPRIKLFETFGATVQALKAGDVDLVLTDSVAAKGYVDSSEGQLKVVGGPLGTEDFGFIFPKGSELVAP VNAAIKALKDDGTLDALNKKWFLDYKMGG >Mature_268_residues TIRRHVLAGIAAVLAAPLAVSAPAFASDLPDLGGKTVVVVTENAYPPLQFVDPKSGQAIGWEYDAMNEIAKRLNFKVEYQ NTSWDAMIQAVSDGQYQIGMTGITIKDDRKEKVDFSDPYLRSEQFMLVRGDETRFSDAKSFAALESGLIGAQPGTSPFYT AVYEILDGNEQNPRIKLFETFGATVQALKAGDVDLVLTDSVAAKGYVDSSEGQLKVVGGPLGTEDFGFIFPKGSELVAPV NAAIKALKDDGTLDALNKKWFLDYKMGG
Specific function: Component of the high-affinity histidine permease, a binding-protein-dependent transport system. The other components are proteins hisQ, hisM, and hisP [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 3 family [H]
Homologues:
Organism=Escherichia coli, GI1787031, Length=254, Percent_Identity=29.5275590551181, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1788228, Length=262, Percent_Identity=30.9160305343511, Blast_Score=105, Evalue=2e-24, Organism=Escherichia coli, GI1787088, Length=260, Percent_Identity=23.8461538461538, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1787085, Length=225, Percent_Identity=24.8888888888889, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1788649, Length=271, Percent_Identity=25.830258302583, Blast_Score=66, Evalue=3e-12,
Paralogues:
None
Copy number: 1440 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 460 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015683 - InterPro: IPR001638 - InterPro: IPR018313 [H]
Pfam domain/function: PF00497 SBP_bac_3 [H]
EC number: NA
Molecular weight: Translated: 29046; Mature: 28915
Theoretical pI: Translated: 4.47; Mature: 4.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIRRHVLAGIAAVLAAPLAVSAPAFASDLPDLGGKTVVVVTENAYPPLQFVDPKSGQAI CCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCEEEEEECCCCCCCEEECCCCCCEE GWEYDAMNEIAKRLNFKVEYQNTSWDAMIQAVSDGQYQIGMTGITIKDDRKEKVDFSDPY CCCHHHHHHHHHHCCEEEEECCCCHHHHHEECCCCCEEEEEEEEEEECCCCCCCCCCCCC LRSEQFMLVRGDETRFSDAKSFAALESGLIGAQPGTSPFYTAVYEILDGNEQNPRIKLFE CCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEE TFGATVQALKAGDVDLVLTDSVAAKGYVDSSEGQLKVVGGPLGTEDFGFIFPKGSELVAP HHCCCEEHHHCCCEEEEEECCCCCCCCEECCCCEEEEEECCCCCCCCEEEECCCCCEEEH VNAAIKALKDDGTLDALNKKWFLDYKMGG HHHHHHHHCCCCCEECCCCEEEEEEECCC >Mature Secondary Structure TIRRHVLAGIAAVLAAPLAVSAPAFASDLPDLGGKTVVVVTENAYPPLQFVDPKSGQAI CHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCEEEEEECCCCCCCEEECCCCCCEE GWEYDAMNEIAKRLNFKVEYQNTSWDAMIQAVSDGQYQIGMTGITIKDDRKEKVDFSDPY CCCHHHHHHHHHHCCEEEEECCCCHHHHHEECCCCCEEEEEEEEEEECCCCCCCCCCCCC LRSEQFMLVRGDETRFSDAKSFAALESGLIGAQPGTSPFYTAVYEILDGNEQNPRIKLFE CCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEE TFGATVQALKAGDVDLVLTDSVAAKGYVDSSEGQLKVVGGPLGTEDFGFIFPKGSELVAP HHCCCEEHHHCCCEEEEEECCCCCCCCEECCCCEEEEEECCCCCCCCEEEECCCCCEEEH VNAAIKALKDDGTLDALNKKWFLDYKMGG HHHHHHHHCCCCCEECCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-glutamine [Periplasm]; H2O [C]
Specific reaction: ATP + L-glutamine [Periplasm] + H2O = ADP + phosphate + L-glutamine [Cytoplasm] [C]
General reaction: Translocates substrate across the membrane [C]
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1448614 [H]