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The map label for this gene is rbsB [H]

Identifier: 150398236

GI number: 150398236

Start: 3191144

End: 3192091

Strand: Reverse

Name: rbsB [H]

Synonym: Smed_3042

Alternate gene names: 150398236

Gene position: 3192091-3191144 (Counterclockwise)

Preceding gene: 150398242

Following gene: 150398235

Centisome position: 84.4

GC content: 60.97

Gene sequence:

>948_bases
ATGTCAGCTAATTGGAGGAAGGCGGCGGCCGCCGCCGTCGTAGGATTTCTATTGAATGCAACCGGCGCGAATGCGCTGAA
TCTCGCCTGGGTGCACGCAAATGCCGCCGCCCAATCCGAGCAGCGGGTCAAGGCCGGCTTCGATGCCTGGCTGAAGGAAA
CCGGCAAGGACTGGAATGTGAGCCTGCTCGACAGCGGCGGCTCCGGCGAACGCACCGCATCCAACCTTCAGGACGCGGCT
TCCCGCGGCGTCGATGCGATCATCATCACCATGGCGGATCTGCGCGCGTCCCGCGCCGCAATCGATGCCGCGGTCGACGC
AAAAATCCCGATCATCACCGTCGACAGCGGTTACATTCCGGGCGTTCTGGTCGACGTCACCACAAATAACTGGGCCATGT
CTTCGGATGTTTCGCCCTATCTGCTGAACGAACTGGGTGGGAAGGGCCGCATCATATTCCTTCGCATGGCCGAACATCAC
GGCACCCGCAAGCGCGGCGACGTGATGGAGACCATCCTCAGGGAATACCCGGACGTGAAGGTTCTGGCCGAGCACAACAT
CGACTACACCGCCTTCTTCGAGGATACGACATCGACGATGCAGGATTATGCATCCCGGTTCGGAGACGAGATCGACGCCG
TCTGGGCTCCCTGGGACGAGCCTGCGCAAGCGGCGATCAACGTGCTGCAGGCTGCCGGCCTCAAGAACGTGAAGGTTATC
GGCATCGACGGCCATCCCAATGCCGTCACCGAGGTCTGCAAGCCGGACGGTCTGATGATCGCCACAGTCAGTCAGCCCTT
CGAGAAGATGGGTGCACAGGCCGGCGCGTGGATCGAGGAGATCGTCGTCAGGAAAGAAGACCCAGCCAAGGTCATACCGG
CGAAGACGGTCTATATGGACGCCCCGTTGGTCACCAAGCAGAACTGCAAGGACTTCCTCCCGAAGTGA

Upstream 100 bases:

>100_bases
TAAGTTGACAAATGTAACGCTGTCAATTTACATGACTGCATTCGCCTAGTGAGCGCGAATGGGGAAGTGGGTCAATGTGG
CCCGCCGTGGAGGAGATCAA

Downstream 100 bases:

>100_bases
CCGAAGGGCCGGCTCCGTCTGAGGAGCCGGCCCGGACTCGACTTGGATTCCGCAGCGTCGCTCGCGATGCGGGGAAAAGG
CAATGGAAGCGAGGACCAGA

Product: ABC-type sugar transport system periplasmic component-like protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MSANWRKAAAAAVVGFLLNATGANALNLAWVHANAAAQSEQRVKAGFDAWLKETGKDWNVSLLDSGGSGERTASNLQDAA
SRGVDAIIITMADLRASRAAIDAAVDAKIPIITVDSGYIPGVLVDVTTNNWAMSSDVSPYLLNELGGKGRIIFLRMAEHH
GTRKRGDVMETILREYPDVKVLAEHNIDYTAFFEDTTSTMQDYASRFGDEIDAVWAPWDEPAQAAINVLQAAGLKNVKVI
GIDGHPNAVTEVCKPDGLMIATVSQPFEKMGAQAGAWIEEIVVRKEDPAKVIPAKTVYMDAPLVTKQNCKDFLPK

Sequences:

>Translated_315_residues
MSANWRKAAAAAVVGFLLNATGANALNLAWVHANAAAQSEQRVKAGFDAWLKETGKDWNVSLLDSGGSGERTASNLQDAA
SRGVDAIIITMADLRASRAAIDAAVDAKIPIITVDSGYIPGVLVDVTTNNWAMSSDVSPYLLNELGGKGRIIFLRMAEHH
GTRKRGDVMETILREYPDVKVLAEHNIDYTAFFEDTTSTMQDYASRFGDEIDAVWAPWDEPAQAAINVLQAAGLKNVKVI
GIDGHPNAVTEVCKPDGLMIATVSQPFEKMGAQAGAWIEEIVVRKEDPAKVIPAKTVYMDAPLVTKQNCKDFLPK
>Mature_314_residues
SANWRKAAAAAVVGFLLNATGANALNLAWVHANAAAQSEQRVKAGFDAWLKETGKDWNVSLLDSGGSGERTASNLQDAAS
RGVDAIIITMADLRASRAAIDAAVDAKIPIITVDSGYIPGVLVDVTTNNWAMSSDVSPYLLNELGGKGRIIFLRMAEHHG
TRKRGDVMETILREYPDVKVLAEHNIDYTAFFEDTTSTMQDYASRFGDEIDAVWAPWDEPAQAAINVLQAAGLKNVKVIG
IDGHPNAVTEVCKPDGLMIATVSQPFEKMGAQAGAWIEEIVVRKEDPAKVIPAKTVYMDAPLVTKQNCKDFLPK

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=263, Percent_Identity=28.8973384030418, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 33967; Mature: 33836

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSANWRKAAAAAVVGFLLNATGANALNLAWVHANAAAQSEQRVKAGFDAWLKETGKDWNV
CCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEE
SLLDSGGSGERTASNLQDAASRGVDAIIITMADLRASRAAIDAAVDAKIPIITVDSGYIP
EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCCEEEEECCCCCC
GVLVDVTTNNWAMSSDVSPYLLNELGGKGRIIFLRMAEHHGTRKRGDVMETILREYPDVK
EEEEEEECCCEEECCCCCHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCEE
VLAEHNIDYTAFFEDTTSTMQDYASRFGDEIDAVWAPWDEPAQAAINVLQAAGLKNVKVI
EEEECCCCEEEEECCHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCEEEE
GIDGHPNAVTEVCKPDGLMIATVSQPFEKMGAQAGAWIEEIVVRKEDPAKVIPAKTVYMD
EECCCCHHHHHHCCCCCEEEEECCHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCEEEEEC
APLVTKQNCKDFLPK
CCCCCHHHHHHCCCC
>Mature Secondary Structure 
SANWRKAAAAAVVGFLLNATGANALNLAWVHANAAAQSEQRVKAGFDAWLKETGKDWNV
CCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEE
SLLDSGGSGERTASNLQDAASRGVDAIIITMADLRASRAAIDAAVDAKIPIITVDSGYIP
EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCCEEEEECCCCCC
GVLVDVTTNNWAMSSDVSPYLLNELGGKGRIIFLRMAEHHGTRKRGDVMETILREYPDVK
EEEEEEECCCEEECCCCCHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCEE
VLAEHNIDYTAFFEDTTSTMQDYASRFGDEIDAVWAPWDEPAQAAINVLQAAGLKNVKVI
EEEECCCCEEEEECCHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCEEEE
GIDGHPNAVTEVCKPDGLMIATVSQPFEKMGAQAGAWIEEIVVRKEDPAKVIPAKTVYMD
EECCCCHHHHHHCCCCCEEEEECCHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCEEEEEC
APLVTKQNCKDFLPK
CCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6313683; 7686882; 9278503; 3011793; 3011794; 8899705; 9298646; 1583688; 7982928; 9641984 [H]