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The map label for this gene is rbsA [H]

Identifier: 150398235

GI number: 150398235

Start: 3189530

End: 3191077

Strand: Reverse

Name: rbsA [H]

Synonym: Smed_3041

Alternate gene names: 150398235

Gene position: 3191077-3189530 (Counterclockwise)

Preceding gene: 150398236

Following gene: 150398234

Centisome position: 84.38

GC content: 62.79

Gene sequence:

>1548_bases
ATGCGGGGAAAAGGCAATGGAAGCGAGGACCAGATGGCCGTCAGTCTTTCCGGCATCGTCATGCAATATCCGGGCACGCG
CGCGCTCGACGACGTAAGCGTCGACTTTCGCTTCGACGAGGTCCACGGCCTTATTGGCGAAAACGGGGCGGGCAAGACCA
CGCTTGTCAGCGTTCTGGCCGGCAGCAAACTGCCGACTGCCGGCAAGATCACGATCGACGGCAGGCAAGCGGTACTGCAC
AGTGCCGGTGACGCGCTGCGCAAGGGCATTGCCCATGTCTCGCAGGAGGGGTGCCTGGTTCCCGGGCTCAGCGCCGCCCA
GAATATCCTGCTCGGAGACGAGCCGAGAAATGCGCTCGGCATCATCAACAAGCGTGAACTCAGCAGCCGCGCGGCAGCTC
TGCTCGAGAAGTGGTTTCCTGAGGTCTCCATCGACCTCGACATGACCATCGACAGCTTGCCGATGGCCGACCAGAAGGTC
ATCGAAATCGTGCGCGCATTGCGCGGCGATATCCGGCTGCTCATCCTCGACGAGCCGACGGCAACGTTGCCGGCGCGCGA
AAAGGAAAATCTCTGGCGCATCATCAAGACATTGCCGGCCCGCGGCGTCGGCATCGTTCTGATCAGCCACTTTCTATCGG
AGGTGAAGGCGCTGAGCGACAGGATTACGGTGCTTCGCGACGGCCGCCACGTCTCCACCCTCGCATCGGTGGAGGCCAGC
GAAGCGCAACTCGTCGATCTCATGCTGCAGCGCGCCGGCGGGGCGGGGACGGGGACCGCCGCGGCACAAGTGACCCGCAC
GATCGGCGACGCGGTGCTCGAACTCGAAGAGTGGAAGGCGGGCGCTGTCGAAGTCGACCGCTTCGCGATCCGGTCAGGGG
AAATTGTCGGCCTGATCGGTCTTACCGGCGCCGGCCATTTCGGTTTTGCCCGGTCGATCTACACCGGGGAAGGCGTGGTC
CGCGGCGAGACGCGGTACAAAGGTCAGTCACTGAGGAGCGTCAACGCCCGCGACATGCAGAAGCGCGGCGTCGCCTTCAT
CCCCGATCAGCGCATGGAAAACGCGCTCGTCGCGGATTGGGATGTGCGTGAGAACCTCGCCATGGTGCATCCGCAGCACG
CGACCTTCGGGTCCACCGGCGTGCTCTCACCGCGCAAGGAAGTGCATGAAGCCAACGAGATCATGTCGCTCCTCAACATC
AAGGCGCATTCCTCGGCGCAGATGATCAAGGATCTCAGCGGGGGCAACAAGCAGAAGGTCTCGATCGGCAAGTGGCTCTA
CGGTGCCGGCGAGCGCTACAGCCTGATGATCTTCATCGAGCCAACCGAAGGCGTCGACATCGGCGCCAAGCGCGAAATCC
ACGGTCACCTGAAGCGGCTGGCGGCGCAGGGTGCGGCCATCATCGTCACGTCGTCGGATCTCATGGAGATCGCCGACATC
TCCGACCGGGTCATTCCGTTTGTCGGCGGACGGGCTCACCCCATCATCGAGCGAGCCGATTTTTCCGAGATCCGATTCAT
CTCTGCCATGGCAGGAGTAATTCAATGA

Upstream 100 bases:

>100_bases
CAAGCAGAACTGCAAGGACTTCCTCCCGAAGTGACCGAAGGGCCGGCTCCGTCTGAGGAGCCGGCCCGGACTCGACTTGG
ATTCCGCAGCGTCGCTCGCG

Downstream 100 bases:

>100_bases
ATGCAACCTCACAAACCCTGGCAGGTGCCAAAGGCGTGACGGCGAGCCGAGGCCGCAAGGACTGGCTCCTCAGATACAGC
ACGCTCTTCGCGCTTATCGT

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 515; Mature: 515

Protein sequence:

>515_residues
MRGKGNGSEDQMAVSLSGIVMQYPGTRALDDVSVDFRFDEVHGLIGENGAGKTTLVSVLAGSKLPTAGKITIDGRQAVLH
SAGDALRKGIAHVSQEGCLVPGLSAAQNILLGDEPRNALGIINKRELSSRAAALLEKWFPEVSIDLDMTIDSLPMADQKV
IEIVRALRGDIRLLILDEPTATLPAREKENLWRIIKTLPARGVGIVLISHFLSEVKALSDRITVLRDGRHVSTLASVEAS
EAQLVDLMLQRAGGAGTGTAAAQVTRTIGDAVLELEEWKAGAVEVDRFAIRSGEIVGLIGLTGAGHFGFARSIYTGEGVV
RGETRYKGQSLRSVNARDMQKRGVAFIPDQRMENALVADWDVRENLAMVHPQHATFGSTGVLSPRKEVHEANEIMSLLNI
KAHSSAQMIKDLSGGNKQKVSIGKWLYGAGERYSLMIFIEPTEGVDIGAKREIHGHLKRLAAQGAAIIVTSSDLMEIADI
SDRVIPFVGGRAHPIIERADFSEIRFISAMAGVIQ

Sequences:

>Translated_515_residues
MRGKGNGSEDQMAVSLSGIVMQYPGTRALDDVSVDFRFDEVHGLIGENGAGKTTLVSVLAGSKLPTAGKITIDGRQAVLH
SAGDALRKGIAHVSQEGCLVPGLSAAQNILLGDEPRNALGIINKRELSSRAAALLEKWFPEVSIDLDMTIDSLPMADQKV
IEIVRALRGDIRLLILDEPTATLPAREKENLWRIIKTLPARGVGIVLISHFLSEVKALSDRITVLRDGRHVSTLASVEAS
EAQLVDLMLQRAGGAGTGTAAAQVTRTIGDAVLELEEWKAGAVEVDRFAIRSGEIVGLIGLTGAGHFGFARSIYTGEGVV
RGETRYKGQSLRSVNARDMQKRGVAFIPDQRMENALVADWDVRENLAMVHPQHATFGSTGVLSPRKEVHEANEIMSLLNI
KAHSSAQMIKDLSGGNKQKVSIGKWLYGAGERYSLMIFIEPTEGVDIGAKREIHGHLKRLAAQGAAIIVTSSDLMEIADI
SDRVIPFVGGRAHPIIERADFSEIRFISAMAGVIQ
>Mature_515_residues
MRGKGNGSEDQMAVSLSGIVMQYPGTRALDDVSVDFRFDEVHGLIGENGAGKTTLVSVLAGSKLPTAGKITIDGRQAVLH
SAGDALRKGIAHVSQEGCLVPGLSAAQNILLGDEPRNALGIINKRELSSRAAALLEKWFPEVSIDLDMTIDSLPMADQKV
IEIVRALRGDIRLLILDEPTATLPAREKENLWRIIKTLPARGVGIVLISHFLSEVKALSDRITVLRDGRHVSTLASVEAS
EAQLVDLMLQRAGGAGTGTAAAQVTRTIGDAVLELEEWKAGAVEVDRFAIRSGEIVGLIGLTGAGHFGFARSIYTGEGVV
RGETRYKGQSLRSVNARDMQKRGVAFIPDQRMENALVADWDVRENLAMVHPQHATFGSTGVLSPRKEVHEANEIMSLLNI
KAHSSAQMIKDLSGGNKQKVSIGKWLYGAGERYSLMIFIEPTEGVDIGAKREIHGHLKRLAAQGAAIIVTSSDLMEIADI
SDRVIPFVGGRAHPIIERADFSEIRFISAMAGVIQ

Specific function: Part of the ABC transporter complex RbsABCD involved in ribose import. Responsible for energy coupling to the transport system [H]

COG id: COG1129

COG function: function code G; ABC-type sugar transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI31657092, Length=225, Percent_Identity=30.6666666666667, Blast_Score=94, Evalue=4e-19,
Organism=Homo sapiens, GI6005701, Length=248, Percent_Identity=26.2096774193548, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI153792144, Length=202, Percent_Identity=26.2376237623762, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI105990541, Length=259, Percent_Identity=24.3243243243243, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI27262624, Length=191, Percent_Identity=24.6073298429319, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI27262626, Length=191, Percent_Identity=24.6073298429319, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI27881501, Length=220, Percent_Identity=28.6363636363636, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI30795238, Length=220, Percent_Identity=28.6363636363636, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI45446740, Length=203, Percent_Identity=28.0788177339901, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI47078218, Length=203, Percent_Identity=28.0788177339901, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI27436953, Length=191, Percent_Identity=26.7015706806283, Blast_Score=74, Evalue=4e-13,
Organism=Homo sapiens, GI27477115, Length=203, Percent_Identity=25.615763546798, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI21536376, Length=221, Percent_Identity=26.2443438914027, Blast_Score=69, Evalue=8e-12,
Organism=Homo sapiens, GI150417984, Length=240, Percent_Identity=27.5, Blast_Score=69, Evalue=9e-12,
Organism=Escherichia coli, GI1788210, Length=473, Percent_Identity=35.0951374207188, Blast_Score=276, Evalue=3e-75,
Organism=Escherichia coli, GI48995001, Length=495, Percent_Identity=34.3434343434343, Blast_Score=251, Evalue=7e-68,
Organism=Escherichia coli, GI1790525, Length=499, Percent_Identity=32.4649298597194, Blast_Score=246, Evalue=2e-66,
Organism=Escherichia coli, GI1788897, Length=470, Percent_Identity=33.6170212765957, Blast_Score=240, Evalue=1e-64,
Organism=Escherichia coli, GI1790190, Length=472, Percent_Identity=31.7796610169492, Blast_Score=238, Evalue=7e-64,
Organism=Escherichia coli, GI1788472, Length=495, Percent_Identity=30.1010101010101, Blast_Score=230, Evalue=1e-61,
Organism=Escherichia coli, GI1789991, Length=489, Percent_Identity=32.9243353783231, Blast_Score=221, Evalue=7e-59,
Organism=Escherichia coli, GI1787792, Length=478, Percent_Identity=32.4267782426778, Blast_Score=214, Evalue=2e-56,
Organism=Escherichia coli, GI1789864, Length=228, Percent_Identity=27.6315789473684, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1787089, Length=226, Percent_Identity=28.3185840707965, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI87082268, Length=222, Percent_Identity=26.5765765765766, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789593, Length=206, Percent_Identity=31.5533980582524, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1787712, Length=220, Percent_Identity=27.7272727272727, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081791, Length=220, Percent_Identity=27.2727272727273, Blast_Score=76, Evalue=7e-15,
Organism=Escherichia coli, GI48994997, Length=234, Percent_Identity=29.0598290598291, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87081782, Length=206, Percent_Identity=26.6990291262136, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI87081834, Length=218, Percent_Identity=28.4403669724771, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI87081709, Length=228, Percent_Identity=26.3157894736842, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1787370, Length=218, Percent_Identity=25.6880733944954, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1786253, Length=191, Percent_Identity=27.7486910994764, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1788761, Length=228, Percent_Identity=25.4385964912281, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1786345, Length=252, Percent_Identity=25, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1786398, Length=226, Percent_Identity=27.8761061946903, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI48994943, Length=220, Percent_Identity=25.9090909090909, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1787029, Length=225, Percent_Identity=23.5555555555556, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1787105, Length=237, Percent_Identity=27.0042194092827, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1787758, Length=210, Percent_Identity=30, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1789891, Length=214, Percent_Identity=29.9065420560748, Blast_Score=62, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17510237, Length=311, Percent_Identity=24.1157556270096, Blast_Score=88, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI115533608, Length=221, Percent_Identity=28.9592760180996, Blast_Score=69, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24666092, Length=229, Percent_Identity=29.2576419213974, Blast_Score=79, Evalue=1e-14,
Organism=Drosophila melanogaster, GI221500365, Length=228, Percent_Identity=26.3157894736842, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI116007184, Length=225, Percent_Identity=25.7777777777778, Blast_Score=78, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24643674, Length=199, Percent_Identity=25.6281407035176, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI221512771, Length=242, Percent_Identity=25.2066115702479, Blast_Score=70, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR015861
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: =3.6.3.17 [H]

Molecular weight: Translated: 55400; Mature: 55400

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGKGNGSEDQMAVSLSGIVMQYPGTRALDDVSVDFRFDEVHGLIGENGAGKTTLVSVLA
CCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCEEEEEEHHHHHHHCCCCCCHHHHHHHHH
GSKLPTAGKITIDGRQAVLHSAGDALRKGIAHVSQEGCLVPGLSAAQNILLGDEPRNALG
CCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCEECCCCCHHHC
IINKRELSSRAAALLEKWFPEVSIDLDMTIDSLPMADQKVIEIVRALRGDIRLLILDEPT
CCCHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCCC
ATLPAREKENLWRIIKTLPARGVGIVLISHFLSEVKALSDRITVLRDGRHVSTLASVEAS
CCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHCCCH
EAQLVDLMLQRAGGAGTGTAAAQVTRTIGDAVLELEEWKAGAVEVDRFAIRSGEIVGLIG
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEHEEECCCCEEEEEE
LTGAGHFGFARSIYTGEGVVRGETRYKGQSLRSVNARDMQKRGVAFIPDQRMENALVADW
ECCCCCCHHHHEEECCCCEEECCCCCCCCHHCCCCHHHHHHCCCEECCCHHHCCCEEECC
DVRENLAMVHPQHATFGSTGVLSPRKEVHEANEIMSLLNIKAHSSAQMIKDLSGGNKQKV
CCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEE
SIGKWLYGAGERYSLMIFIEPTEGVDIGAKREIHGHLKRLAAQGAAIIVTSSDLMEIADI
EECCEEECCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHC
SDRVIPFVGGRAHPIIERADFSEIRFISAMAGVIQ
CCCEEECCCCCCCCCEECCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRGKGNGSEDQMAVSLSGIVMQYPGTRALDDVSVDFRFDEVHGLIGENGAGKTTLVSVLA
CCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCEEEEEEHHHHHHHCCCCCCHHHHHHHHH
GSKLPTAGKITIDGRQAVLHSAGDALRKGIAHVSQEGCLVPGLSAAQNILLGDEPRNALG
CCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCEECCCCCHHHC
IINKRELSSRAAALLEKWFPEVSIDLDMTIDSLPMADQKVIEIVRALRGDIRLLILDEPT
CCCHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCCC
ATLPAREKENLWRIIKTLPARGVGIVLISHFLSEVKALSDRITVLRDGRHVSTLASVEAS
CCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHCCCH
EAQLVDLMLQRAGGAGTGTAAAQVTRTIGDAVLELEEWKAGAVEVDRFAIRSGEIVGLIG
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEHEEECCCCEEEEEE
LTGAGHFGFARSIYTGEGVVRGETRYKGQSLRSVNARDMQKRGVAFIPDQRMENALVADW
ECCCCCCHHHHEEECCCCEEECCCCCCCCHHCCCCHHHHHHCCCEECCCHHHCCCEEECC
DVRENLAMVHPQHATFGSTGVLSPRKEVHEANEIMSLLNIKAHSSAQMIKDLSGGNKQKV
CCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEE
SIGKWLYGAGERYSLMIFIEPTEGVDIGAKREIHGHLKRLAAQGAAIIVTSSDLMEIADI
EECCEEECCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHC
SDRVIPFVGGRAHPIIERADFSEIRFISAMAGVIQ
CCCEEECCCCCCCCCEECCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA