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The map label for this gene is rbsC [H]

Identifier: 150398234

GI number: 150398234

Start: 3188487

End: 3189533

Strand: Reverse

Name: rbsC [H]

Synonym: Smed_3040

Alternate gene names: 150398234

Gene position: 3189533-3188487 (Counterclockwise)

Preceding gene: 150398235

Following gene: 150398233

Centisome position: 84.34

GC content: 61.51

Gene sequence:

>1047_bases
ATGAATGCAACCTCACAAACCCTGGCAGGTGCCAAAGGCGTGACGGCGAGCCGAGGCCGCAAGGACTGGCTCCTCAGATA
CAGCACGCTCTTCGCGCTTATCGTTCTGTTCCTTGGCTTCGCCATCACCGTCGATCGATTCCTCACGGCGTCCAACCTGC
TCAACATCATCCAGCAGATTTCGATGCTGACGATCGTCGGTGCCGGATTGACCTTCGGCTTTGCCGCGCGTGAAATGGAT
TTGTCGGTCGGCTATATGGTTGGTCTTTCCGGTATCCTCGTGCCGTTGCTGCTGATTTCGGGTGTGCCGCTGCCGCTTGC
GCTTCTCGCTGGAGTCGGCGCCGGCTTCGCGGTCGGCGCAGTCAATTCCGCATTGGTGACGCTTGTCGGCGTGCCCTCGC
TGATAGCGACCCTGGCAACAGGTTCGATCCTTTACGGCATCAACTTTCTCACGACTGGCGGCCGCGCCATCTATGGCGGC
CTGCCGGATGCCTATCTGTGGATGGGGCAGGGGCGGTTGCTCGGGATTCCCGTGCTCGCCTATGCAATGGTGCTCTTCGT
GCTGCTGGCATGGTTCCTGATGGAGCGGACGATTTTCGGCCGCTACATCTACGCGGCCGGCGGCAATCTCAGGGCGGCGG
AGCTCTCGGGCGTCAACGGCCGCTTCTACCGTGCCGCGGCGCTCGTCGTCTGCAGCCTCTTTGCTGCTGTCGCCGGCGCA
TTGCTGGCCGCGTCTCGGCTCCGGTCAGCCGAATGCCGGCGAGCGCTACCTGCTCGATGGCCTGGCAACCGTGTTCATCG
GCATGACGATGATCCGTCCCGGCACGGCGACCGTCACCGGCACCTTCTTCGGGGCACTGTTCATCGGCGTCATCAACAAC
GGACTGAACCTTGTCGGCATGGACACCTACATCCAGAGCATCGTCAAGGGACTGATCATCCTGGTCGCCGTAGCGATCGT
CTCCCGGACGACGAAGCTCAAGCTTCTCTGATCGCGGAATCCCGAATCATGAACCATAAAAGGAGGGACGCGTGGACGCT
CCTGTGA

Upstream 100 bases:

>100_bases
ACCGGGTCATTCCGTTTGTCGGCGGACGGGCTCACCCCATCATCGAGCGAGCCGATTTTTCCGAGATCCGATTCATCTCT
GCCATGGCAGGAGTAATTCA

Downstream 100 bases:

>100_bases
ATACCAACCTGCTCGAGCTCTATCGGACGATGCGGCGCATCCGCACCTTCGAGGAACGGGTCGGCGAACTCTTCGTGCGC
GGACAATCCGCAGGTTCGAT

Product: monosaccharide-transporting ATPase

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MNATSQTLAGAKGVTASRGRKDWLLRYSTLFALIVLFLGFAITVDRFLTASNLLNIIQQISMLTIVGAGLTFGFAAREMD
LSVGYMVGLSGILVPLLLISGVPLPLALLAGVGAGFAVGAVNSALVTLVGVPSLIATLATGSILYGINFLTTGGRAIYGG
LPDAYLWMGQGRLLGIPVLAYAMVLFVLLAWFLMERTIFGRYIYAAGGNLRAAELSGVNGRFYRAAALVVCSLFAAVAGA
LLAASRLRSAECRRALPARWPGNRVHRHDDDPSRHGDRHRHLLRGTVHRRHQQRTEPCRHGHLHPEHRQGTDHPGRRSDR
LPDDEAQASLIAESRIMNHKRRDAWTLL

Sequences:

>Translated_348_residues
MNATSQTLAGAKGVTASRGRKDWLLRYSTLFALIVLFLGFAITVDRFLTASNLLNIIQQISMLTIVGAGLTFGFAAREMD
LSVGYMVGLSGILVPLLLISGVPLPLALLAGVGAGFAVGAVNSALVTLVGVPSLIATLATGSILYGINFLTTGGRAIYGG
LPDAYLWMGQGRLLGIPVLAYAMVLFVLLAWFLMERTIFGRYIYAAGGNLRAAELSGVNGRFYRAAALVVCSLFAAVAGA
LLAASRLRSAECRRALPARWPGNRVHRHDDDPSRHGDRHRHLLRGTVHRRHQQRTEPCRHGHLHPEHRQGTDHPGRRSDR
LPDDEAQASLIAESRIMNHKRRDAWTLL
>Mature_348_residues
MNATSQTLAGAKGVTASRGRKDWLLRYSTLFALIVLFLGFAITVDRFLTASNLLNIIQQISMLTIVGAGLTFGFAAREMD
LSVGYMVGLSGILVPLLLISGVPLPLALLAGVGAGFAVGAVNSALVTLVGVPSLIATLATGSILYGINFLTTGGRAIYGG
LPDAYLWMGQGRLLGIPVLAYAMVLFVLLAWFLMERTIFGRYIYAAGGNLRAAELSGVNGRFYRAAALVVCSLFAAVAGA
LLAASRLRSAECRRALPARWPGNRVHRHDDDPSRHGDRHRHLLRGTVHRRHQQRTEPCRHGHLHPEHRQGTDHPGRRSDR
LPDDEAQASLIAESRIMNHKRRDAWTLL

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=251, Percent_Identity=34.6613545816733, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1790524, Length=229, Percent_Identity=34.061135371179, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI1788896, Length=244, Percent_Identity=31.5573770491803, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1787793, Length=200, Percent_Identity=31.5, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI145693214, Length=180, Percent_Identity=31.1111111111111, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI145693152, Length=252, Percent_Identity=30.952380952381, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788471, Length=213, Percent_Identity=29.5774647887324, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 37742; Mature: 37742

Theoretical pI: Translated: 11.18; Mature: 11.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNATSQTLAGAKGVTASRGRKDWLLRYSTLFALIVLFLGFAITVDRFLTASNLLNIIQQI
CCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SMLTIVGAGLTFGFAAREMDLSVGYMVGLSGILVPLLLISGVPLPLALLAGVGAGFAVGA
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHH
VNSALVTLVGVPSLIATLATGSILYGINFLTTGGRAIYGGLPDAYLWMGQGRLLGIPVLA
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCEEEECCCCHHHEEECCCCEECHHHHH
YAMVLFVLLAWFLMERTIFGRYIYAAGGNLRAAELSGVNGRFYRAAALVVCSLFAAVAGA
HHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEHCCCCCCCHHHHHHHHHHHHHHHHHHHH
LLAASRLRSAECRRALPARWPGNRVHRHDDDPSRHGDRHRHLLRGTVHRRHQQRTEPCRH
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHC
GHLHPEHRQGTDHPGRRSDRLPDDEAQASLIAESRIMNHKRRDAWTLL
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNATSQTLAGAKGVTASRGRKDWLLRYSTLFALIVLFLGFAITVDRFLTASNLLNIIQQI
CCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SMLTIVGAGLTFGFAAREMDLSVGYMVGLSGILVPLLLISGVPLPLALLAGVGAGFAVGA
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHH
VNSALVTLVGVPSLIATLATGSILYGINFLTTGGRAIYGGLPDAYLWMGQGRLLGIPVLA
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCEEEECCCCHHHEEECCCCEECHHHHH
YAMVLFVLLAWFLMERTIFGRYIYAAGGNLRAAELSGVNGRFYRAAALVVCSLFAAVAGA
HHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEHCCCCCCCHHHHHHHHHHHHHHHHHHHH
LLAASRLRSAECRRALPARWPGNRVHRHDDDPSRHGDRHRHLLRGTVHRRHQQRTEPCRH
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHC
GHLHPEHRQGTDHPGRRSDRLPDDEAQASLIAESRIMNHKRRDAWTLL
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]