Click here to switch to the map view.

The map label for this gene is yjjP [C]

Identifier: 150398199

GI number: 150398199

Start: 3152611

End: 3153867

Strand: Direct

Name: yjjP [C]

Synonym: Smed_3002

Alternate gene names: 150398199

Gene position: 3152611-3153867 (Clockwise)

Preceding gene: 150398198

Following gene: 150398200

Centisome position: 83.36

GC content: 63.01

Gene sequence:

>1257_bases
GTGACGCAGTCCGATAATAAAAGGCCCGAACCCGGCGTGCCGGACGACTCGATCGACATGCTGCTGCGGTTTGCCGCTAT
GATGTTTCGTTCCGGGGGCACCGCCACCCGTACCCGCGAACTTGTGGGGGCGATGGCGCACCGCCTCAACCTGGAAACGC
CATCGGTGAGTCTCACGCTCGAATCCGTCACCCTCAGTGTTTATCGCGGCAGCGAACAGTTCGTAGCGATACGCGAGATC
GGTCCGCCCGGAATCGACTTCAGGCGCCTCGGTGAGTTGGAGCGGCTTGCGAACGCGCCAGAGGCAACGGCACCGCCACA
CCGGATCGCGACAGAACTTGCTGAAATCGAATCGCGCGCGCCTCGATATTCCGGGTGGCAGATGGCGATCGCGATCGGCC
TGGCCAGCGGAGGGTTTGCGTTCCTCAACGGAGCGGCCCTGCCGGAAATGGCCACCGCCGCGATCGGTGGCGGCACAGGT
CAAGGATTGCGTTGGTGGTTGACCCGCCGCCAATTGACCGACTTCGGCACGGCGGCATTGGCTGCTGTAACCGCTGCCGG
AACTTACGTTCTGGTGGCGGCGCTGGCGCACCGTGCAGGGATTGCGTTCTCGCACTATGCCGCGGGCTTCATCTCCACCA
TACTATTTCTCATCCCGGGCGTTTCGCTGATTGCAGGATTGTTCGACCTGTTGCAGCATCAGACGGTGGCTGCCTTAAGC
CGGCTGGCACATGGCGCGTTGATCCTGTTCATCGTCGCTTCGGGGCTGAGCATCGTGATGACTGTTGCGAGCATCGAGCT
GTTGCCGCGCTCTGCGCCGGCCGAGCTTGCCTATCCGTTGCGCCTTTCGCTTCGCGCCGTCGCGAGCTTCGTCGCTGGCT
GCGGCTTCGCCATGCTGTTCAACAGCGCGCCATTTTTGGTGGTCGTCGCGGGCATCGTGGCGCTGGCGGCGAATAGCGTG
CGCCTCGTCCTGATCGACATGGGAATGCTGCTGGCGCCGGCGGCGTTCATCGCCGCGTTTTCGATAGGAATCATCGCCGT
TCTTGCGAGCCGGCGGTTGGACGCAGAGCTCATGGCCATTGTTACCCCGCCAGTCGTCATCATGATTCCGGGTCTCTACG
CATTCGAGATGCTTGTTCTGTTCAACCGGGGGCAGATGCTCGAGGCCATGCAGGCCTCGGGGGCAGGCATCTTCGTGATC
AGCGCGCTGGCGATGGGGTTGAGCGTGGCGCGCCTTGCAGTCCCGTGGGAACGATAG

Upstream 100 bases:

>100_bases
GCAAGGCCGGGAGGTGTCGGTTAACCGCAGAACAATGTGCAGATTTTCGAATATCGCATGGAATAAAATCTGGGCGTTTG
GATAGCTGAAAGGGTGAGGT

Downstream 100 bases:

>100_bases
TCGATACTTGAAAGCTGTTCTACCGTGTAGTATCCGCCGTCAATGAAGAACGTATCACCGCGCGGCCTCTTGGCCGGAAG
TAGCGCGGATGGAGAATACG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 418; Mature: 417

Protein sequence:

>418_residues
MTQSDNKRPEPGVPDDSIDMLLRFAAMMFRSGGTATRTRELVGAMAHRLNLETPSVSLTLESVTLSVYRGSEQFVAIREI
GPPGIDFRRLGELERLANAPEATAPPHRIATELAEIESRAPRYSGWQMAIAIGLASGGFAFLNGAALPEMATAAIGGGTG
QGLRWWLTRRQLTDFGTAALAAVTAAGTYVLVAALAHRAGIAFSHYAAGFISTILFLIPGVSLIAGLFDLLQHQTVAALS
RLAHGALILFIVASGLSIVMTVASIELLPRSAPAELAYPLRLSLRAVASFVAGCGFAMLFNSAPFLVVVAGIVALAANSV
RLVLIDMGMLLAPAAFIAAFSIGIIAVLASRRLDAELMAIVTPPVVIMIPGLYAFEMLVLFNRGQMLEAMQASGAGIFVI
SALAMGLSVARLAVPWER

Sequences:

>Translated_418_residues
MTQSDNKRPEPGVPDDSIDMLLRFAAMMFRSGGTATRTRELVGAMAHRLNLETPSVSLTLESVTLSVYRGSEQFVAIREI
GPPGIDFRRLGELERLANAPEATAPPHRIATELAEIESRAPRYSGWQMAIAIGLASGGFAFLNGAALPEMATAAIGGGTG
QGLRWWLTRRQLTDFGTAALAAVTAAGTYVLVAALAHRAGIAFSHYAAGFISTILFLIPGVSLIAGLFDLLQHQTVAALS
RLAHGALILFIVASGLSIVMTVASIELLPRSAPAELAYPLRLSLRAVASFVAGCGFAMLFNSAPFLVVVAGIVALAANSV
RLVLIDMGMLLAPAAFIAAFSIGIIAVLASRRLDAELMAIVTPPVVIMIPGLYAFEMLVLFNRGQMLEAMQASGAGIFVI
SALAMGLSVARLAVPWER
>Mature_417_residues
TQSDNKRPEPGVPDDSIDMLLRFAAMMFRSGGTATRTRELVGAMAHRLNLETPSVSLTLESVTLSVYRGSEQFVAIREIG
PPGIDFRRLGELERLANAPEATAPPHRIATELAEIESRAPRYSGWQMAIAIGLASGGFAFLNGAALPEMATAAIGGGTGQ
GLRWWLTRRQLTDFGTAALAAVTAAGTYVLVAALAHRAGIAFSHYAAGFISTILFLIPGVSLIAGLFDLLQHQTVAALSR
LAHGALILFIVASGLSIVMTVASIELLPRSAPAELAYPLRLSLRAVASFVAGCGFAMLFNSAPFLVVVAGIVALAANSVR
LVLIDMGMLLAPAAFIAAFSIGIIAVLASRRLDAELMAIVTPPVVIMIPGLYAFEMLVLFNRGQMLEAMQASGAGIFVIS
ALAMGLSVARLAVPWER

Specific function: Unknown

COG id: COG2966

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44011; Mature: 43880

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQSDNKRPEPGVPDDSIDMLLRFAAMMFRSGGTATRTRELVGAMAHRLNLETPSVSLTL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEE
ESVTLSVYRGSEQFVAIREIGPPGIDFRRLGELERLANAPEATAPPHRIATELAEIESRA
EEEEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC
PRYSGWQMAIAIGLASGGFAFLNGAALPEMATAAIGGGTGQGLRWWLTRRQLTDFGTAAL
CCCCCCEEEEEEEECCCCHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
AAVTAAGTYVLVAALAHRAGIAFSHYAAGFISTILFLIPGVSLIAGLFDLLQHQTVAALS
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
RLAHGALILFIVASGLSIVMTVASIELLPRSAPAELAYPLRLSLRAVASFVAGCGFAMLF
HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
NSAPFLVVVAGIVALAANSVRLVLIDMGMLLAPAAFIAAFSIGIIAVLASRRLDAELMAI
CCCCHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
VTPPVVIMIPGLYAFEMLVLFNRGQMLEAMQASGAGIFVISALAMGLSVARLAVPWER
HCCCCEEEECCHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TQSDNKRPEPGVPDDSIDMLLRFAAMMFRSGGTATRTRELVGAMAHRLNLETPSVSLTL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEE
ESVTLSVYRGSEQFVAIREIGPPGIDFRRLGELERLANAPEATAPPHRIATELAEIESRA
EEEEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC
PRYSGWQMAIAIGLASGGFAFLNGAALPEMATAAIGGGTGQGLRWWLTRRQLTDFGTAAL
CCCCCCEEEEEEEECCCCHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
AAVTAAGTYVLVAALAHRAGIAFSHYAAGFISTILFLIPGVSLIAGLFDLLQHQTVAALS
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
RLAHGALILFIVASGLSIVMTVASIELLPRSAPAELAYPLRLSLRAVASFVAGCGFAMLF
HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
NSAPFLVVVAGIVALAANSVRLVLIDMGMLLAPAAFIAAFSIGIIAVLASRRLDAELMAI
CCCCHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
VTPPVVIMIPGLYAFEMLVLFNRGQMLEAMQASGAGIFVISALAMGLSVARLAVPWER
HCCCCEEEECCHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA