The gene/protein map for NC_009636 is currently unavailable.
Definition Sinorhizobium medicae WSM419 chromosome, complete genome.
Accession NC_009636
Length 3,781,904

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The map label for this gene is ygfF [H]

Identifier: 150398134

GI number: 150398134

Start: 3083742

End: 3084494

Strand: Reverse

Name: ygfF [H]

Synonym: Smed_2937

Alternate gene names: 150398134

Gene position: 3084494-3083742 (Counterclockwise)

Preceding gene: 150398135

Following gene: 150398133

Centisome position: 81.56

GC content: 66.93

Gene sequence:

>753_bases
ATGAGCAACGGACCTGTGCTTCTCGTCACCGGGGGCAGCCGCGGCATCGGCGCCGCGATTGCGCTTGCCGCGGCCAGCGA
GGGTTGGAGGGTCGCGGTCAACTACGCGTCCAATCGCAACGCGGCCGAAGAGGTGGTCCGACGCATTTTGCAAGCTGGGG
GCACAGCCGTTTCCGTCGAAGGCGACGTGGGCAGGGAAGAGGGGGTCAAGGCGATCTTTGCCGCCGTCGACTCCGTCTTC
GGCCGTCTCGACGGTCTCGTCAACAATGCCGGCATTATCGGCCCGCCGCAGCGCGTGGACGAGATTTCGCCTGAGCGAAT
CGAGCGGCTTTTCCGCATCAATGTGACCGGCTCCATCCGTTGCGCCGCCGAGGCGGTGCTCCGGATGTCGACGCGTCACG
GCGGGCGGGGGGGCTCGATCGTCAATCTCTCCTCCATCGCTGCCGTGCTTGGCGCGCCCGGGCAATATGTCGACTACGCA
GCCACGAAGGGCGCGATCGACAGCTTCACCGTCGGACTGGCGCGTGAAACCGCCACCGAGGGCATACGCGTGAACGCGGT
CCGGCCCGGCGTCATCGACACGGAAATCCATGCCTCCGGCGGGCTGCCCGACCGCGCCCGCGACCTCGCGCCAACGATCC
CGATGCAGCGTCCCGGAACGGCCGGCGAGGTTGCCGACGCAATTCTCTATCTCCTGTCCGACAAGGCAACGTATGTCACG
GGAACCATTCTCACGGTCAGCGGCGGGCGGTAG

Upstream 100 bases:

>100_bases
TCCCCGATTTCGGACCGTCGCTGCGCGAATCGAGCGCCTGGGGCGAGGGCAAGGGCAGCACCGACAGTTCCGATGTTTTC
CGGTTCAAGGGATGTGGATC

Downstream 100 bases:

>100_bases
CCCTCCCACGACTGCCCTCCAAAGACCGTCCTCCCAAGAAGGATTATCAAATGGCCTATGATCTCATCGTTATCGGAAGC
GGCCCCGGCGGCTATGTCTG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MSNGPVLLVTGGSRGIGAAIALAAASEGWRVAVNYASNRNAAEEVVRRILQAGGTAVSVEGDVGREEGVKAIFAAVDSVF
GRLDGLVNNAGIIGPPQRVDEISPERIERLFRINVTGSIRCAAEAVLRMSTRHGGRGGSIVNLSSIAAVLGAPGQYVDYA
ATKGAIDSFTVGLARETATEGIRVNAVRPGVIDTEIHASGGLPDRARDLAPTIPMQRPGTAGEVADAILYLLSDKATYVT
GTILTVSGGR

Sequences:

>Translated_250_residues
MSNGPVLLVTGGSRGIGAAIALAAASEGWRVAVNYASNRNAAEEVVRRILQAGGTAVSVEGDVGREEGVKAIFAAVDSVF
GRLDGLVNNAGIIGPPQRVDEISPERIERLFRINVTGSIRCAAEAVLRMSTRHGGRGGSIVNLSSIAAVLGAPGQYVDYA
ATKGAIDSFTVGLARETATEGIRVNAVRPGVIDTEIHASGGLPDRARDLAPTIPMQRPGTAGEVADAILYLLSDKATYVT
GTILTVSGGR
>Mature_249_residues
SNGPVLLVTGGSRGIGAAIALAAASEGWRVAVNYASNRNAAEEVVRRILQAGGTAVSVEGDVGREEGVKAIFAAVDSVFG
RLDGLVNNAGIIGPPQRVDEISPERIERLFRINVTGSIRCAAEAVLRMSTRHGGRGGSIVNLSSIAAVLGAPGQYVDYAA
TKGAIDSFTVGLARETATEGIRVNAVRPGVIDTEIHASGGLPDRARDLAPTIPMQRPGTAGEVADAILYLLSDKATYVTG
TILTVSGGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40254992, Length=248, Percent_Identity=35.4838709677419, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI59889578, Length=201, Percent_Identity=36.81592039801, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI15277342, Length=253, Percent_Identity=31.6205533596838, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI7705925, Length=244, Percent_Identity=33.1967213114754, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=31.3008130081301, Blast_Score=88, Evalue=9e-18,
Organism=Homo sapiens, GI31542939, Length=205, Percent_Identity=33.1707317073171, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI109715829, Length=245, Percent_Identity=31.8367346938775, Blast_Score=85, Evalue=6e-17,
Organism=Homo sapiens, GI19923817, Length=263, Percent_Identity=30.0380228136882, Blast_Score=81, Evalue=7e-16,
Organism=Homo sapiens, GI4758504, Length=256, Percent_Identity=28.90625, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI10190704, Length=261, Percent_Identity=31.4176245210728, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI4504505, Length=199, Percent_Identity=35.678391959799, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI66933014, Length=255, Percent_Identity=31.3725490196078, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI224922801, Length=174, Percent_Identity=32.7586206896552, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI5031737, Length=250, Percent_Identity=28.4, Blast_Score=68, Evalue=8e-12,
Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=55.1020408163265, Blast_Score=261, Evalue=3e-71,
Organism=Escherichia coli, GI1789378, Length=245, Percent_Identity=35.5102040816327, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1787335, Length=248, Percent_Identity=35.8870967741936, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1788459, Length=245, Percent_Identity=31.8367346938775, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI2367365, Length=248, Percent_Identity=33.8709677419355, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI87082160, Length=255, Percent_Identity=29.8039215686275, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=32.3886639676113, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1790717, Length=251, Percent_Identity=29.0836653386454, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=31.7647058823529, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1789057, Length=259, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786812, Length=260, Percent_Identity=29.6153846153846, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789208, Length=252, Percent_Identity=27.7777777777778, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787891, Length=247, Percent_Identity=26.7206477732794, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=262, Percent_Identity=37.7862595419847, Blast_Score=124, Evalue=4e-29,
Organism=Caenorhabditis elegans, GI115534694, Length=244, Percent_Identity=36.0655737704918, Blast_Score=121, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI71994604, Length=259, Percent_Identity=36.6795366795367, Blast_Score=121, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI25147288, Length=246, Percent_Identity=35.3658536585366, Blast_Score=114, Evalue=6e-26,
Organism=Caenorhabditis elegans, GI17555706, Length=250, Percent_Identity=36, Blast_Score=107, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI17538182, Length=257, Percent_Identity=33.4630350194552, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17559104, Length=261, Percent_Identity=32.183908045977, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17560150, Length=264, Percent_Identity=30.6818181818182, Blast_Score=97, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17538486, Length=262, Percent_Identity=31.2977099236641, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17562904, Length=255, Percent_Identity=30.1960784313725, Blast_Score=91, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17562906, Length=267, Percent_Identity=29.9625468164794, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17561402, Length=253, Percent_Identity=29.2490118577075, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI17531453, Length=273, Percent_Identity=31.1355311355311, Blast_Score=90, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI17562990, Length=265, Percent_Identity=30.188679245283, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17562910, Length=259, Percent_Identity=30.1158301158301, Blast_Score=88, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17565030, Length=262, Percent_Identity=30.9160305343511, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17544670, Length=274, Percent_Identity=28.1021897810219, Blast_Score=87, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI193204405, Length=272, Percent_Identity=30.8823529411765, Blast_Score=87, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI72000259, Length=265, Percent_Identity=29.0566037735849, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17562908, Length=272, Percent_Identity=30.8823529411765, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17551412, Length=265, Percent_Identity=30.188679245283, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17536025, Length=256, Percent_Identity=31.640625, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17563726, Length=259, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17560332, Length=263, Percent_Identity=31.9391634980989, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=30.3030303030303, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17560676, Length=250, Percent_Identity=29.6, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17508651, Length=257, Percent_Identity=31.1284046692607, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17568967, Length=195, Percent_Identity=34.3589743589744, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17536651, Length=257, Percent_Identity=30.7392996108949, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17560220, Length=278, Percent_Identity=29.4964028776978, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17561272, Length=205, Percent_Identity=29.2682926829268, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17564282, Length=195, Percent_Identity=28.2051282051282, Blast_Score=67, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6323882, Length=245, Percent_Identity=33.8775510204082, Blast_Score=82, Evalue=8e-17,
Organism=Saccharomyces cerevisiae, GI6322861, Length=192, Percent_Identity=33.8541666666667, Blast_Score=80, Evalue=4e-16,
Organism=Saccharomyces cerevisiae, GI6324126, Length=257, Percent_Identity=29.5719844357977, Blast_Score=70, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6322227, Length=198, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6322226, Length=197, Percent_Identity=28.9340101522843, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28571526, Length=251, Percent_Identity=37.0517928286853, Blast_Score=132, Evalue=2e-31,
Organism=Drosophila melanogaster, GI21357041, Length=251, Percent_Identity=36.6533864541833, Blast_Score=123, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24644339, Length=252, Percent_Identity=34.5238095238095, Blast_Score=119, Evalue=2e-27,
Organism=Drosophila melanogaster, GI23397609, Length=258, Percent_Identity=37.5968992248062, Blast_Score=114, Evalue=4e-26,
Organism=Drosophila melanogaster, GI24643142, Length=249, Percent_Identity=32.9317269076305, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI21355319, Length=255, Percent_Identity=32.9411764705882, Blast_Score=94, Evalue=7e-20,
Organism=Drosophila melanogaster, GI24639444, Length=249, Percent_Identity=32.9317269076305, Blast_Score=93, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24644337, Length=212, Percent_Identity=31.6037735849057, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI17737361, Length=239, Percent_Identity=33.4728033472803, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI24641232, Length=210, Percent_Identity=31.4285714285714, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI116007236, Length=237, Percent_Identity=30.379746835443, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI221331218, Length=253, Percent_Identity=27.6679841897233, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24665243, Length=252, Percent_Identity=27.7777777777778, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI18859837, Length=213, Percent_Identity=35.2112676056338, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24648693, Length=241, Percent_Identity=30.7053941908714, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21355889, Length=241, Percent_Identity=30.7053941908714, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI221331216, Length=252, Percent_Identity=26.984126984127, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24665247, Length=252, Percent_Identity=26.984126984127, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI281364494, Length=238, Percent_Identity=30.672268907563, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24584748, Length=216, Percent_Identity=29.1666666666667, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI161076933, Length=216, Percent_Identity=28.2407407407407, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25716; Mature: 25585

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MSNGPVLLVTGGSRGIGAAIALAAASEGWRVAVNYASNRNAAEEVVRRILQAGGTAVSVE
CCCCCEEEEECCCCCCCHHHHEEECCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEC
GDVGREEGVKAIFAAVDSVFGRLDGLVNNAGIIGPPQRVDEISPERIERLFRINVTGSIR
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHEECCCCCHH
CAAEAVLRMSTRHGGRGGSIVNLSSIAAVLGAPGQYVDYAATKGAIDSFTVGLARETATE
HHHHHHHHHHHCCCCCCCCEEEHHHHHHHHCCCCCCEEHHHCCCCHHHHHHHHHHHHHCC
GIRVNAVRPGVIDTEIHASGGLPDRARDLAPTIPMQRPGTAGEVADAILYLLSDKATYVT
CEEEEEECCCEEEEEEECCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEE
GTILTVSGGR
EEEEEECCCC
>Mature Secondary Structure 
SNGPVLLVTGGSRGIGAAIALAAASEGWRVAVNYASNRNAAEEVVRRILQAGGTAVSVE
CCCCEEEEECCCCCCCHHHHEEECCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEC
GDVGREEGVKAIFAAVDSVFGRLDGLVNNAGIIGPPQRVDEISPERIERLFRINVTGSIR
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHEECCCCCHH
CAAEAVLRMSTRHGGRGGSIVNLSSIAAVLGAPGQYVDYAATKGAIDSFTVGLARETATE
HHHHHHHHHHHCCCCCCCCEEEHHHHHHHHCCCCCCEEHHHCCCCHHHHHHHHHHHHHCC
GIRVNAVRPGVIDTEIHASGGLPDRARDLAPTIPMQRPGTAGEVADAILYLLSDKATYVT
CEEEEEECCCEEEEEEECCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEE
GTILTVSGGR
EEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 7764507 [H]